| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4927 |
|---|
| Symbol | |
|---|
| ID | 4015879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007949 |
|---|
| Strand | - |
|---|
| Start bp | 22142 |
|---|
| End bp | 23191 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637944567 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_551699 |
|---|
| Protein GI | 91790748 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTG ACACTGGCAA CCACATGCAC GATTTGACGC CATCGCAGCG CCCGGTGGCA
GGGTACACCA GGCTTGGTTG GCTGGTGGTG CTGCTTGGTG TGGGAGGGTT TTTGCTATGG
GCCTCGATTG CGCCGCTCGA TAAGGGCGTT CCGGTGAGCG GCACGGTGAT TTCCGACGGT
AACCGCAAGA GCGTGCAGCA CCCGACCGGC GGCATTGTGG ACCAGATGCT GGTGAAGGAA
GGCGATACCG TGACTGAAGG TCAGCTGGTG GCCCGCCTGA ACACGACCCA GGCCACGGCC
AACTTGAATG CCTCGCGGGA GACGGTGCTG GGCCTGCAGA TGCAGATTCG TGGCCTGCGG
GCCTCGCGGG AGTCCAAAGT GCTGCAAGCG CGGTTGCTGG GGCAGCAGAT CGGTGGCCTG
GACGACTTGG TGCGTGACGG TTTTGTGCCC CGCAACCGTT TGCTGGAATT GCAGCGCCAG
GCCGCGCAAC TGCAGGGCGG CATGGCTGAG GATGAGGGTA ACCTGGGACG CGCGGAGCGG
CAGATCAACG AAATTCAGCA GCGCCTGGTG GCCTACGAAT TCGAGATTGC CAACGCCGCC
GTGAAGACGA CCGCAGCCGG CGTCGTGCAG GGCCTGACTG TTTTCAACCC GGGTGCGGTG
ATCGGGCCTG GGCACAAGTT GTTCGAGATC GTGCCGCAGG GCGTTGCCCT GGTGGTGGAA
GGCCAGGTAC CGACGCACCT GATTGACCGT GTCGCGCCGG GGCTGGGTGT GGAGCTGATG
TTTACGGCTT TCAACCAGGC CAGCACGCCG CATATTCCTG CCCATGTCAC CCTGGTGTCG
CCAGACCGCT TTGTGGACGA GCGGTCGGGC ACGCCTTACT TCAAGCTGAA GGCGGAAGTC
ACGCCCGAAG GCATGGCGAT GCTCACGGGA CTGTCGCTGC GCCCAGGAAT GCCGGTGGAG
CTGTTTATCA AGACCGGCGA GCGCACCTTG ATGAACTACC TTTTCAAACC TTTGCTGGAC
CGTTTCCACG GCGGCTTGCG TGAGAATTAA
|
|---|
| Protein sequence | MSRDTGNHMH DLTPSQRPVA GYTRLGWLVV LLGVGGFLLW ASIAPLDKGV PVSGTVISDG
NRKSVQHPTG GIVDQMLVKE GDTVTEGQLV ARLNTTQATA NLNASRETVL GLQMQIRGLR
ASRESKVLQA RLLGQQIGGL DDLVRDGFVP RNRLLELQRQ AAQLQGGMAE DEGNLGRAER
QINEIQQRLV AYEFEIANAA VKTTAAGVVQ GLTVFNPGAV IGPGHKLFEI VPQGVALVVE
GQVPTHLIDR VAPGLGVELM FTAFNQASTP HIPAHVTLVS PDRFVDERSG TPYFKLKAEV
TPEGMAMLTG LSLRPGMPVE LFIKTGERTL MNYLFKPLLD RFHGGLREN
|
|---|
| |