| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4899 |
|---|
| Symbol | |
|---|
| ID | 4012435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 5188357 |
|---|
| End bp | 5190114 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637944541 |
|---|
| Product | RNA-directed DNA polymerase |
|---|
| Protein accession | YP_551673 |
|---|
| Protein GI | 91790721 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.539476 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA TCGGCAACGA TGCTGCGTCT TCGGGCGAAT CAAGTGAATG GCACTCCATC
GATTGGAGGG CTGTCACGCG GTTCGTAGGA AAGGCGCAGA TGCGCATAGC GCAGGCAGAA
CAGGAGAAGG ACTTCCGACG AGTTGCAAGA CTCACACGAA GTCTCATCCG ATCCTGGCAA
GCCAAGGCAT TGGCAGTCAG GCGAGTAACG GAAAACCAGG GGAAGCGGAC GAGTGGCGTC
GACTGCGTGC TCTGGGACAC GCCAACAAAG AAATGGAATG CGATTGGTTG TCTGAACCCT
AAAGGGTATC GGGCCCGCCC CCTCCGGCGG GTCTACATCC CGAAGGCCAA CGGAAAGGAA
CGCCCCTTGG GCATGCCGAC TATGAAGGAC AGAGCGATGC AAGCACTTTA TCTGCTTGCA
CTGGAACCGG CTGTGGAATG TGCGTCCGAT CCGAACTCAT ATGGGTTCCG GAAGGGCAGA
TCAGCCCATG ATGCGCGGTC TCAGTTGTTT GTATCTTTAT CCAAAAAGGC TTCGGCCCAA
TGGGTATTGG ATGCGGACAT CGCTGGGTTC TTTGACAACA TCAACCATGA GTGGTTGCTG
AACCACGTCC ACATGGACAA GGTGATGCTG CGCAAGTGGT TGAAATCTGG AGTTGTTGAC
GCGGGTCAGC TCCAGCGCAC GGATGACGGT ACGCCGCAGG GCGGCGTCAT CTCGCCGGCG
TTAGCGAACA TCACCCTGAA TGGCTTGGAA ACGGGGCTCA TGCAATTCCT CCGGGAAAAG
CTGGGCGTCA AGCAGGCAAT AAAGGTGAAG GTGAACTTGG TAAGGTACGC AGATGACTTC
GTGGTGACGG GTAGTTCAAA AGGCTTCCTT GAGACCACTG TCCGACCTTG GATTGTTGAA
TTCTTGCGCG AGCGGGGGTT GACACTGTCC GAGGAAAAGA CGCGCATTGT GCAGATTGAC
CAGGGTTTTG ATTTTCTGGG GTGGAACTTC CGTAAATACG GGGGCAAGCT ACTCATCAAA
CCGAGCCAGA AAAACGTGAA AGCGTTCTAT GCCAAGGTAA AAAAGGAAAT CGTTGAATCG
CTATCGAAGG TTCCAGTAGA AACGTTGATA AAGCGCCTGA ACCCAATCCT CAAAGGTTGG
GCTCAGTACC ACAAGGGCAC GGTTGCCAAG CAGATTTTCA GCAAAGTGGA TTCTCTGATT
TATTGGAGAC TGATGCGCTG GGGTATGCGG ACGCACCCGC GCAAGACGGC GGGCTGGGTG
TACGGACATT ACTGGAAACA GTGTGGCTCA CGCAAACAGT TCGCGGGCTT GCAGGATGAC
CCGTCCGGAG GTGATGAAAG GATACCGCTG CCGCTGTATC GCCTGTCGGA CATGAAAATT
GTCCGGCACA TCAAGGTCAA GGGGGATTAC AACCCCTTCC ACCCGGACTG GGTTGCCTAC
GGGGAGAAAC TGCGAGTGCA ACGAATGGGT GAAACCATTT GGAGCGCTCA AAGGGCCTCT
CTGTGGTTCG ACCAAGGTGG TAAATGCGCT CTCTGTCAAC AAGAAATCGA CATGGCTGAT
GAAAACATGG ACGACCACCA TATCGTCTAT CGGCAGCTAG GAGGGAGTGA TGCTCTTTCC
AATCGGGTGC TGTTACATCC GATCTGTCAC AGGCGTGTCC ACGCCCTAGG TTTGAAGGTT
ATCAAGCCGG TCCCCGGTAC GGGGGACTTT AATCTGGCGA AGCAGTCGAA GGTTATGCAA
CCTGTTGAAG CTGTGTAG
|
|---|
| Protein sequence | MENIGNDAAS SGESSEWHSI DWRAVTRFVG KAQMRIAQAE QEKDFRRVAR LTRSLIRSWQ
AKALAVRRVT ENQGKRTSGV DCVLWDTPTK KWNAIGCLNP KGYRARPLRR VYIPKANGKE
RPLGMPTMKD RAMQALYLLA LEPAVECASD PNSYGFRKGR SAHDARSQLF VSLSKKASAQ
WVLDADIAGF FDNINHEWLL NHVHMDKVML RKWLKSGVVD AGQLQRTDDG TPQGGVISPA
LANITLNGLE TGLMQFLREK LGVKQAIKVK VNLVRYADDF VVTGSSKGFL ETTVRPWIVE
FLRERGLTLS EEKTRIVQID QGFDFLGWNF RKYGGKLLIK PSQKNVKAFY AKVKKEIVES
LSKVPVETLI KRLNPILKGW AQYHKGTVAK QIFSKVDSLI YWRLMRWGMR THPRKTAGWV
YGHYWKQCGS RKQFAGLQDD PSGGDERIPL PLYRLSDMKI VRHIKVKGDY NPFHPDWVAY
GEKLRVQRMG ETIWSAQRAS LWFDQGGKCA LCQQEIDMAD ENMDDHHIVY RQLGGSDALS
NRVLLHPICH RRVHALGLKV IKPVPGTGDF NLAKQSKVMQ PVEAV
|
|---|
| |