| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4806 |
|---|
| Symbol | |
|---|
| ID | 4012496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 5088182 |
|---|
| End bp | 5089057 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637944450 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_551582 |
|---|
| Protein GI | 91790630 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02249] integron integrase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.92941 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCAT CGACTGCGGC TGTTACGCCG CTGCGCCAGC GCATGCTGGA CGATATGCGC
TTGCGCAAAC TCGAAGACAA GACCCAGAGC AGCTACATCC GCGCCGTGCG CAAGCTCGCT
GGCTTTCTCA GGCGCTCGCC CGACACCGCC ACAGTCGAGG ATCTGCGGCG CTTTCAGTTG
CACCTGGTCG ATCAGGGCAC CTCGCCGATC ACCCTGAACG CGACCATCAC CGGCTTGAAG
TTCTTCTTTG AGGTTACGCT GGAGCGCGCC GATCTGATGG CCAGAATGCA GTCGGTGCGC
GTGCCGCAGA AGTTGCCGGT TGTCCTCAGC CCGCAAGAGG TCGCGCGCCT GATTGCCGCA
ACCGCGAACC TCAAGCACCA AACAGCGCTG TCGGTGGCCT ACGGCGCGGG CCTACGCGCC
AGCGAAGTGA TCGCGCTGAA GGTCGGCGAC ATCGACAGCC AGCGCATGAC GCTGCGCGTG
GAGCAAGGCA AGGGCCGCAA GGACCGCTAC GCCATGCTCG CGCCGGTGCT GCTGCAGCGC
CTGCGCGCTT GGTGGCGCGT GGGCCATGCC CAGGGCAAGA TGCTGCCCGG CGGTTGGCTC
TTTCCCGGCC TGGACCCCGT GCAGCCGCTG ACCACCCGGC AACTCAATCG CGCCATCCAC
GCCGCAGCCC AGGACGCCAA GATCGACAAG CGCGTGTCCA TGCACACCTT GCGGCACAGC
TTCGCCACCC ACTTGCTGGA GCAGAAGGTG GACATCCGGG TGATCCAGGT GCTGCTGGGC
CACAAGAAGC TGGAGACGAC CTCGATGTAC ACCCATGTGG CTACCGAAGT GCTGCGCGAG
GTGATCAGCC CACTGGAGAG CCTGCCAGCC CCGTAG
|
|---|
| Protein sequence | MNPSTAAVTP LRQRMLDDMR LRKLEDKTQS SYIRAVRKLA GFLRRSPDTA TVEDLRRFQL
HLVDQGTSPI TLNATITGLK FFFEVTLERA DLMARMQSVR VPQKLPVVLS PQEVARLIAA
TANLKHQTAL SVAYGAGLRA SEVIALKVGD IDSQRMTLRV EQGKGRKDRY AMLAPVLLQR
LRAWWRVGHA QGKMLPGGWL FPGLDPVQPL TTRQLNRAIH AAAQDAKIDK RVSMHTLRHS
FATHLLEQKV DIRVIQVLLG HKKLETTSMY THVATEVLRE VISPLESLPA P
|
|---|
| |