| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4600 |
|---|
| Symbol | holA |
|---|
| ID | 4012719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4877981 |
|---|
| End bp | 4879105 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637944249 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_551381 |
|---|
| Protein GI | 91790429 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTATCCC TACCCTCCAA CCTGGCCCCC GCGCAACTGT CCGAGCACCT CAAGCGCGGC
TTGAAAAGCC TTTACACGCT GCATGGCGAT GAGCCCTTGC TGGTGCAGGA GTTCGCCGAT
GCCCTGCGCG CGGCGGCCCG GGAGCAGGGC TACACCGAAC GCACCGTACA CACGGTGGCC
GGGGCGCATT TCGACTGGAG CGAGGTGCTG GCCAGTGGCG GCTCGCTGAG CCTGTTTGCC
GACAGGCAGA TTGTCGAGAT CCGCATTCCC AGCGGCAAAC CCGGCAAGGA CGGGTCGGTC
GCGCTGCAGC AGCTGGCCGA GCGCGCCCAG GGCGACGACT CCACGCTCAC GCTGGTGCTG
CTGCCCCGGC TGGACAGCAT GACCGCCAAG GGCGCCTGGT TTGGCGCGCT CGACAGCTTT
GGCGTCACGG TGAAGTTCGA CCCGATTGAC CGGCGCAACC TGCCGCAATG GATTGCCCAG
CGCCTGCAAC AGCAGGGCCA GCGCGTGGCG GCAGGTGAAG AAGGCCAGCG CACCCTGCAG
TTTTTTGCCG ACCGGGTGGA AGGCAACCTG CTGGCCGCGC ACCAGGAGAT CCAGAAGCTG
GGCTTGCTGT ACCCCGCCCA GGAAGACGGC ATCCTCAGTT TTGACCAGGT GGAAAACGCG
GTGCTGAATG TGGCGCGCTA TGACGTGTTC AAGCTGTCGG AGGCCGTGCT TGGCGGCCAG
GCGGTGCGCG TGGCGCGCAT GCTCGACGGC CTGCAGTCCG AGGGCGAGTC TGAAGTGCTG
GTGCACTGGG CGCTGAGTGA AGACATCCGC AGCATGAAGC GGGTGAAAGA CGCGATCCAG
GCCGGCCGGC CCATGCCGAT GGCCCTGCGC GAAAACCGCG TCTGGGGCAT CAAGGAAAAA
CTGTTTGAAC GTGTGCTGCC CCAGATGGGC GACACCACGC TGGCCAACCT GCTGCATGCC
GCGCACAAGG TCGACGGCAT CGTCAAGGGC CTGAAGCAGC CCGACTGGCC GGCCGACGGC
TGGCAGGCCC TGCACCGGCT GGCCGGCATG GTCTGCCGGG AGTGCGCGGC ACCGTCCGCT
GCGCCTCGCG GGTTGCGCAA TCCGGTGGAG ATCGCACGGG GCTAG
|
|---|
| Protein sequence | MVSLPSNLAP AQLSEHLKRG LKSLYTLHGD EPLLVQEFAD ALRAAAREQG YTERTVHTVA
GAHFDWSEVL ASGGSLSLFA DRQIVEIRIP SGKPGKDGSV ALQQLAERAQ GDDSTLTLVL
LPRLDSMTAK GAWFGALDSF GVTVKFDPID RRNLPQWIAQ RLQQQGQRVA AGEEGQRTLQ
FFADRVEGNL LAAHQEIQKL GLLYPAQEDG ILSFDQVENA VLNVARYDVF KLSEAVLGGQ
AVRVARMLDG LQSEGESEVL VHWALSEDIR SMKRVKDAIQ AGRPMPMALR ENRVWGIKEK
LFERVLPQMG DTTLANLLHA AHKVDGIVKG LKQPDWPADG WQALHRLAGM VCRECAAPSA
APRGLRNPVE IARG
|
|---|
| |