| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4514 |
|---|
| Symbol | |
|---|
| ID | 4012789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4768926 |
|---|
| End bp | 4771115 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637944166 |
|---|
| Product | hydroxymethylglutaryl-CoA lyase |
|---|
| Protein accession | YP_551298 |
|---|
| Protein GI | 91790346 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases
[COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.014296 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.538689 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCAA CCATGTCAAA TTCTCACGTA TTGATCAGTG AAGTCGGCCC CCGCGACGGT
CTGCAATCGG TCAAGGCCAC CATGCCGACA GCCGACAAGC TGCGCTGGAT TGACGCGCTT
TACAAAGCCG GCGTGCGCGA AATTGAAGTG GCTTCCTTCG TGCCGGCCCG GCTGCTGCCG
CAGATGGCCG ATGCCGCTGA GGTGGTGCGC CATGCGATCA CGCTGCCCGG CCTCACGGTG
ATGGCGCTGG TGCCCAACCG CCGCGGCGCG GAGGCGGCGC TGGCGGCCGG CGTGCACAAG
CTGACGATGC CGGTGTCGGC CAGTGCCGCG CATTCGCTGG CCAATGTGCG CAAGACGCGC
GAAGAGATGG TCGAGGAAGT GCGCGCCATC TCTGACCTGC GCCGCGATCT CGCGCCTCAC
GTCAGGCTCG AAGCCGCCAT TTCCACCGCC TTCGGTTGCA CGCTGCAGGG CGAGGTGCCC
GAAGACGACG TGATCCGGCT GGCCGCGCAA TGCATTGCGG CCGGTGCCGA CGAGTCGGGC
CTGTCGGACA CCGTCGGCTA TGCCAACCCG GCGCAGGTGC GCCGCCTGTT CCGGCGCCTG
CGTGCCGAAA TCGGCCGCCA CGCCGGCGCG GCCCACATGC ACAACACCCG CGGCCTGGGC
CTGGCCAATT GCCTGGCCGC GTATGACGAA GGCGTTCGCA CCTTCGACGC GTCGCTCGGT
GGCCTGGGCG GCTGCCCCTA TGCGCCGGGC GCGTCGGGCA ACGTCGTCAC CGAAGACCTG
GTTTTCATGT TCGAGGCCAT GGGCGTGCCG ACCGGCATTG ATCTCGAAAA ACTCATGGCC
GCGCGCGCGC CGCTGATGGC CGGGCTGCCG GGCGAGCCGG TGTATGGCAT GACACCCGAG
GCCGGCCTGC CCAGGGGCTT TGTCCAGGGC GCACGCATGA CGGCAACTGC CACACCCATC
CCTGACGAAA GCAACAACAG CAGCAACAGC GAGATCAGCG ACACACCGCT GCCCTACGCC
GGCATCCGCG TCGTCGAATT CACCCACATG GTGATGGGCC CGACCTGCGG CCTGCTGCTG
GGCGACCTGG GCGCCGAGGT CATCAAGGTG GAGCCGGTCG AGGGCGACAG CACGCGCCGC
CTGCTGGGCT CGGGCGCCGG ATTTTTCCCG ACCTTCAACC GCAACAAGAA AAGCATTGCG
CTCGACCTGA AGACGCCCGA AGGCGTGGAG GCCGCGCTGC GCCTGATTGC CACGGCAGAC
ATCGTCAGCG AGAACTTCAA ACCCGGCACC ATGAAGAAGC TGGGTCTGGA CTACGAGACG
CTGAAGCAGC GCCACCCGCG CCTGATCTAT GTCAGTCACA AGGGTTTTTT GCCCGGGCCT
TACGAGCATC GCACCGCCCT GGATGAAGTG GTGCAGATGA TGGGCGGGCT GGCCTACATG
ACGGGCCGCA GCGGCGACCC CCTGCGCGCA GGCACCAGCG TCAACGACAT CATGGGCGGC
ATGTTTGGCG CCATAGGGGC GATGGCCGCC TTGCGCCAGC GCGAACGCAC CGGGCTGGGC
ACGGAGGTGC AGTCGGCCTT GTTTGAAAAC AATGTGTTCC TGGTGGGCCA GCACATGATG
CAGTTCGCCG CCACCGGCCA TGCCGCCGCG CCCATGCCCA GCCGCATTTC GGCGTGGGCG
GTGTACGACG TGTTCACCGT GAAAGACGGC GAACAGATTT TTCTGGCGGC CGTCAGCGAC
AAGCAATGGG CGATTTTCTG CAAGGCCTTT GGGCTGGACG AGCTGCTGGT CGACCCGCGC
CTCAAAACCA ACAACGACCG CGTGCGCGCC CGGGAGTGGA TGATGCCCAT CCTGCGCTCG
CACCTGGCCG AGCGCAGCGC GGCTGAACTC CGCGCGGTGT TTGAAGCCAA CGAATTGCCT
TTTGCACCCA TCGTGCGGCC TGAAGAGCTT TTTGGGGATC CGCACCTGAA CGCGACCGGT
GGCCTGGCGC CCGTCCGGAT GAACGACGGC AGCCAGTCCA AAGTGCCGCT GATGCCCTTC
ACGCTGGGCG GCAAACGGCC CGGTATCCGG CTGCAGCCGC CGCTGCTGGG CGAGCACAGC
CGCGAATTGC TGCTGGAGCT GGGCTATGGC GAAGACGCCA TCCAGGCTTT CCAGAATTCC
GCCGAAAGCA TCGCTCAAAG CAACCGTTAA
|
|---|
| Protein sequence | MNATMSNSHV LISEVGPRDG LQSVKATMPT ADKLRWIDAL YKAGVREIEV ASFVPARLLP
QMADAAEVVR HAITLPGLTV MALVPNRRGA EAALAAGVHK LTMPVSASAA HSLANVRKTR
EEMVEEVRAI SDLRRDLAPH VRLEAAISTA FGCTLQGEVP EDDVIRLAAQ CIAAGADESG
LSDTVGYANP AQVRRLFRRL RAEIGRHAGA AHMHNTRGLG LANCLAAYDE GVRTFDASLG
GLGGCPYAPG ASGNVVTEDL VFMFEAMGVP TGIDLEKLMA ARAPLMAGLP GEPVYGMTPE
AGLPRGFVQG ARMTATATPI PDESNNSSNS EISDTPLPYA GIRVVEFTHM VMGPTCGLLL
GDLGAEVIKV EPVEGDSTRR LLGSGAGFFP TFNRNKKSIA LDLKTPEGVE AALRLIATAD
IVSENFKPGT MKKLGLDYET LKQRHPRLIY VSHKGFLPGP YEHRTALDEV VQMMGGLAYM
TGRSGDPLRA GTSVNDIMGG MFGAIGAMAA LRQRERTGLG TEVQSALFEN NVFLVGQHMM
QFAATGHAAA PMPSRISAWA VYDVFTVKDG EQIFLAAVSD KQWAIFCKAF GLDELLVDPR
LKTNNDRVRA REWMMPILRS HLAERSAAEL RAVFEANELP FAPIVRPEEL FGDPHLNATG
GLAPVRMNDG SQSKVPLMPF TLGGKRPGIR LQPPLLGEHS RELLLELGYG EDAIQAFQNS
AESIAQSNR
|
|---|
| |