| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4500 |
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| Symbol | |
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| ID | 4012814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 4755619 |
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| End bp | 4756899 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637944152 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_551284 |
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| Protein GI | 91790332 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.792831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.645527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCG CAGTTTTCCT GGGCTCCCTG CTCGCCGCCA TGGCGCTGGG CATTCCCATT
TCATTTTCCC TGTTGCTGTG CGGTGCCGCA TTGATGTGGC ACCTGGATAT GTTCGATGCG
CAAATTCTGG CGCAGAACGT GATCAACGGT GCTGACAGCT TCCCGCTGCT GGCGGTACCG
TTTTTCATGC TGGCTGGGGA AATCATGAAC GCCGGCGGCC TGTCGCGCCG TATCGTCAAC
TTTGCCATGA CGCTGGTGGG GCACATCAAG GGCGGGCTGG GCTATGTGGC CATTGTGGCG
GCCGTGCTGA TGGCCGCCCT GTCCGGCTCC GCCGTGGCAG ATGCCGCCGC CCTGTCGGCC
CTGTTGCTGC CCATGATGGT GGCCGCCGGC CACGACAAGG CGCGCTCCGC CGGCCTGCTG
GCATCGGCCA GCATCATCGC TCCCGTTATT CCGCCCAGCA TCGGCTTCGT GATCTTCGGC
GTGGCGGCCA ATGTCTCGAT TTCCAAGCTA TTCATGGCCG GCATTGCGCC CGGCGTCATG
CTCGGGGTCG CCTTGTGGTT CACGTGGTGG TATGTCGCAC GCAAGGAAAC CGTCGCGGTG
CCCCCCCGCA AGTCACGTGC GGACGTGATC GCCGCCTTCA AGGACACCAC CTTTGCGATG
GTCTTGCCGG TGATCGTGGT GGTGGGTCTG AAGTTTGGCG TGTTCACGCC CACCGAGGCG
GCGGTGGTGG CTGCGGTTTA CGCGCTGTTG ATCTCGACGC TGGTCTACAG GGAGCTCAAG
CTCAACCAGT TGTACGGCCT GTTTCTGGCG GCGGCCAAGA CGACGGCGGT GATCATGTTC
CTCGTTGCCG CGGCGATGGT CTCGGCCTGG CTAATCACGG TGGCGCAATT GCCGGCGCAG
GTGGTCACGC TGCTGCAACC GCTGCTGGAC AGCCCGAAGC TGCTGATGCT GGCCATCATG
GTGCTGGTGA TGGTGGTGGG TGCGGCGATG GACATGACCC CCACTATCCT GATTCTCACC
CCGGTGCTGA TGCCGATCGT GAAAGCGGCA GGGATTGACC CGGTGTACTT TGGCGTGCTG
TTCATCATCA ACAACGCGAT CGGCCTGATC ACGCCACCGG TCGGAACCGT GCTCAACACC
GTCGCAGGCG TGGGCAAGGT TAGCATGGAC GAGGTGACCA AGGGCGTCTG GCCGTTCATG
ATCGCGCAGT TCGCCATCAT GTTCCTGATG GTGCTGTTCC CGCAGCTGGT CATGGTGCCC
GCACGCTGGT TCTATGGCTA G
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| Protein sequence | MTIAVFLGSL LAAMALGIPI SFSLLLCGAA LMWHLDMFDA QILAQNVING ADSFPLLAVP
FFMLAGEIMN AGGLSRRIVN FAMTLVGHIK GGLGYVAIVA AVLMAALSGS AVADAAALSA
LLLPMMVAAG HDKARSAGLL ASASIIAPVI PPSIGFVIFG VAANVSISKL FMAGIAPGVM
LGVALWFTWW YVARKETVAV PPRKSRADVI AAFKDTTFAM VLPVIVVVGL KFGVFTPTEA
AVVAAVYALL ISTLVYRELK LNQLYGLFLA AAKTTAVIMF LVAAAMVSAW LITVAQLPAQ
VVTLLQPLLD SPKLLMLAIM VLVMVVGAAM DMTPTILILT PVLMPIVKAA GIDPVYFGVL
FIINNAIGLI TPPVGTVLNT VAGVGKVSMD EVTKGVWPFM IAQFAIMFLM VLFPQLVMVP
ARWFYG
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