| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4485 |
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| Symbol | |
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| ID | 4012838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 4739321 |
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| End bp | 4740868 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637944137 |
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| Product | sigma-54 (RpoN) |
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| Protein accession | YP_551269 |
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| Protein GI | 91790317 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.181904 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCAAG GGCTTTCTCT CCGCGTCTCG CAGCATCTCG CGCTCACGCC GCAGCTGCAG
CAGTCGATTC GCCTGCTGCA GCTGTCCACG CTTGAGCTGA GCCAGGAAGT CGAGCAGATG
CTCGATGAAA ATCCGTTTCT GGAGGTGTCT GAAGAAGCCG CCCCGCGCGA GGAATTTGGC
CTGGAACAGA CCGACACGCC GGTCAGCCAG GACAGCCGGG AGTTCGAATT TGCTGCAGAT
TCAGTAGCTG TCAATGGCGA TGAATCGAGG GCTGCAGGCC AAAATGATGC CGACATTGGC
CCCGAGGTCA GTTCCGAGGC CAAGCTGGAG GAAAGCTGGG AGGGCGACGG CTCGGTGGAG
TCCTCGCCTG ACGACAGCGA ATGGGGCGGC GACGCGCCGG CCCGCAAGAG CAATGCGGAC
GACAGCGAGG CCGAGGCTTC CGACCTGGCC CGCAGCCATG AGTCGCTGCA GGACCATTTG
CATCGCCAGT CGCTCGGCCT GCGCCTGTCG GAGGAAGACC AGGCGGCACT GCATTTCCTG
ATCGAGTCGC TCAATGACGA CGGCTACCTT GAAGACAGTC TCGCGTCACT GGCCGCTGGC
CTGGCGGGCG ACGACCTTGA GCAGGCCGAA GAGCTGGAAC AGCACTTTGC CATGGCCCTG
AAGCTGCTGC AGCACATGGA GCCGGCCGGT GTCGGCGCCC GCAACCTGGC CGAGTGCCTC
GGCCTGCAAC TGCTCGACTG CAAGGACTGC GACGAGACCC GCGCAGCGAT CGCCATGTGC
AAGCAGCCCA TGGAGCTGCT GGCCAAGCGG GACGTCAAGC GCCTGTCCTA CCTGTGCGGG
TTTCCGGACA GCGTGATCAG GGGCGCCATC GCCGTGATCG GCCGGCTGGA TCCCAAGCCC
GGGCGGCGGT TTGTCAACGT CGAGCGCAAC CTCATCGTGC CCGACGTGAT CGTCGTCAAG
TCGGGCCGCG GCTTCAAGGT CTCCCTCAAC AGCGAGGTCA TGCCCCGCCT GCGCGTGCAC
GACATCTATG CCAATGCGCT GAAGCAGCAC AAGGGCCAGA ACGGGCAGGC CTTGCAGCAG
CGCTTGCAGG AAGCGCGCTG GTTCATCAAG AACATCCAGC AGCGCTTTGA CACCATCCTG
CGCGTGAGCA GCGCGATTGT GGAGCGGCAA AAGAATTTCT TCACCCACGG CGAGCTGGCC
ATGCGTCCGC TGGTGCTGCG CGAAATTGCC GACGAACTGG GCCTGCACGA GTCCACCATC
TCGCGCGTCA CCACGGCCAA GTACATGAGC ACGCCGTTCG GCACCTTCGA GCTCAAGTAC
TTTTTCGGCT CCGCGCTGGG CACCGAGACT GGTGGTAACG CATCCAGCAC CGCGGTGCGC
GCACTGATCA AGCAGTTTGT CTCGTCCGAG AGCCTGAAAA AACCGCTCAG CGACAACCAG
ATTTCCGAAA TGCTCAAGGA GCAGGGCATT GAATGCGCGC GCCGCACCGT GGCCAAGTAC
CGCGAAGCTT TGCGCATCGC GCCTGCCAAC CTGCGCAAAT CGCTTTGA
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| Protein sequence | MKQGLSLRVS QHLALTPQLQ QSIRLLQLST LELSQEVEQM LDENPFLEVS EEAAPREEFG
LEQTDTPVSQ DSREFEFAAD SVAVNGDESR AAGQNDADIG PEVSSEAKLE ESWEGDGSVE
SSPDDSEWGG DAPARKSNAD DSEAEASDLA RSHESLQDHL HRQSLGLRLS EEDQAALHFL
IESLNDDGYL EDSLASLAAG LAGDDLEQAE ELEQHFAMAL KLLQHMEPAG VGARNLAECL
GLQLLDCKDC DETRAAIAMC KQPMELLAKR DVKRLSYLCG FPDSVIRGAI AVIGRLDPKP
GRRFVNVERN LIVPDVIVVK SGRGFKVSLN SEVMPRLRVH DIYANALKQH KGQNGQALQQ
RLQEARWFIK NIQQRFDTIL RVSSAIVERQ KNFFTHGELA MRPLVLREIA DELGLHESTI
SRVTTAKYMS TPFGTFELKY FFGSALGTET GGNASSTAVR ALIKQFVSSE SLKKPLSDNQ
ISEMLKEQGI ECARRTVAKY REALRIAPAN LRKSL
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