| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4460 |
|---|
| Symbol | |
|---|
| ID | 4012852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4712538 |
|---|
| End bp | 4714982 |
|---|
| Gene Length | 2445 bp |
|---|
| Protein Length | 814 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637944113 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_551245 |
|---|
| Protein GI | 91790293 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2730] Endoglucanase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGAC GTGAATTTTC AAAGGCCGCC GTTGCCGTCG CCGCTCTCGG AGGCCTCGGC
GTGGCCTCGG CCGGCCGCCC CATCAAGACC GTCCCGGGCG GGACCACCAC GCCCCCTCCA
ACGACCACGA TTTCGGGCGT GCCCATGGGC ACCAATCTCT CCGGCATGGA GTGGGCCAAG
CCTGGTTTGC GCTACGGCAT GAGCACGGCG CCCAACCTGA ACTTCACCGT GCCCCGTGCG
CAGGACGTCG CTTACCTGGC GGCCAATGGC TACGCCAAGA ACCGCCTGCC CATCCAGTGG
GAGCTGTTGC AGCCCATGCT GCCCGATACC TATGCCAATG CCGCGGCCAT CGCTGCCATC
GGCAACCCGG GCGCGTTTCA TGCGGGGTAC GAGTCCTACA TCACCGGCGT GCTGGACGCG
CATGCGGCAG CGGGCACCAA ATGCATCATC GACAACCACA ACTACTGCCG CTACCAGGAC
TTCAAGTACC AGGCCGATGG CTCCGTGATT GGTCTGACGG TTCCGTCGGA TCCGCTGATC
AGGCCGTACA CGACCGACAA CACGCAGGTA CGCAAGCGGA TTTTTGCGCT GGCCGCGGGT
GCCACACTCA CGCGAGCCCA CTTCACGGAT TTCTGGACAC GTGTTGCGGC CAAGTGGGGC
AGCCACCCCG GTTTTGGCGG TTACGGCCTG ATGAACGAAC CGCACGACAT GCCTCAGCCC
GGCGGCATCG TGGCTTGGAA TGAAGACGCC GTCAAAACCG CCGAAGACCT GACGATCTGG
CCGGCCTTTG CGCAGGCCGC CATCAATGCG ATTCGCACCA TCGACGCCGC CAATCCCATC
TATGTGGCGG GGAATCTGTG GGACTCGGCG ATGTTCGTCG GAATCAAGAA TCCGGGTTTC
CCGCTGATGG GCCGCAACCT CATCTACGAA GTCCACATGT ACCTGGATGC ATACAGCAAT
GGCGCTGCCT TTGACTATGA CACCGAAGTG GCCAAGAACT ACAGCGCAGG CTTTGGCGTG
GGCTCCATCA CGGAGTCGAC TGGCGCCGAC CGCATCAAGA TTGCCACGGA CTGGGCCAAG
GCCAACGGTG TCAAGTTGGC CTTGACCGAA ACGGGCATGC CGATCGATGA CCTGCGGTGG
CAGGCCATGT TCTCCAGGGC CGTGAGCTAT GCACGTGCAG CCGGTTGCGA AATCTACAGC
TGGATGGGTG GCAACCACTG GCCCATCCGC AATTACGCGA TCAACCATGT GCCGGGCTGG
CACCAGAACA AGACGCTGGA GCCGTCGGTC TCGGGCCCGC TGAAGGCGTC CGCCGGGATC
GCCAAAGCCG TGCTGTTTGA CGACGGGCCG GGTTATGCGC TGGCGGGCAC GTCCATCACC
ATCACGGTCT ATGCCCGCGG GAATCTGGCG GCGCCCGTGA GCATTGGGGT GTCGTCGAAC
AACGGCGGCA CGTTCAGCAA AACGGTGCTG ATCATTCCCG CCGGCGCGAA CGGCCAGGAC
ACGTTCACCT ACGTGCCCGA GTCCAACCGC ATCGCGACGC TGACCTATAC CAGCGATGGC
CAGCTGTCAG GCCAGGTTCC GCCCCAGCGC AAAATCTATT CGCTCAATGA CCCGGTCGCC
TATGCGGCCA CCAGCCTGCC GGGCGCCGCG ATGGCGATCC TGGCGAAATA CAGCGCCGCC
AAATGGGATC TCGCCGACGG GTACACCGAC TACCTGCAGG GCGCCCCCGC CGCCGCCGGC
GAGCCGGTGC GCGCCATCTC CGACTCCGGC TTTGGCTCCA GCGCCGGCAA CGCCATGGAA
ATGATCAACT GGGTCAACAA GGCCAATGGC GGCATGGGCG CGATGTCGGT GCCCGTGATG
CGCGTGACCA ACGGCAAAAA GAACTCGGAC CATGCGGTCT ACAACACCTG GGGTTTCTGG
TGCAAGAAGT CGCTCAAGAT GCAAGGCATC CAGCCCAACC CCAGAAACCG GGTGCCGTAC
AACCTGGAGG ATTCGCACTT TGTCATCGCG GCGGTGAGCG TGCCCGGCCA GTACAACACC
GGTGTGCTGT TTCAGGCGTC ACAGGCCGAG GCCCGCTTCA CGTCAGAGCT CAATTTCACC
AACAGCTGCC CTGGCGCGAA ATGGGTGGAT GCCAGCGGGC AGACCGTGCA ACTGGCCAGC
TCCACCAAGC TGCCCGTCAA TGTGCCGTCC GTGGTGTCGT TCACCTGCGC GCCCGGCTCG
CAAAAGCTGC GTGTGAACTC TGCCCTGGTG GCGGGCGCGA GTGCAAGTTT CTCGCCAAGC
GCCTTCAACC AGATGCTGAT CGGCTGGGGT TACCTCAGCT ACTACCCGCG CGACGGCTTC
CGGGGAAACA TCTATGCCGT CATCAGCGGC AAAGGCGCGC CCACGGCGGA AGAGCTGGGT
GTGCTGGAGA AATACCTGGC GAGCACCGCG GGTGTCGCGA TTTAA
|
|---|
| Protein sequence | MQRREFSKAA VAVAALGGLG VASAGRPIKT VPGGTTTPPP TTTISGVPMG TNLSGMEWAK
PGLRYGMSTA PNLNFTVPRA QDVAYLAANG YAKNRLPIQW ELLQPMLPDT YANAAAIAAI
GNPGAFHAGY ESYITGVLDA HAAAGTKCII DNHNYCRYQD FKYQADGSVI GLTVPSDPLI
RPYTTDNTQV RKRIFALAAG ATLTRAHFTD FWTRVAAKWG SHPGFGGYGL MNEPHDMPQP
GGIVAWNEDA VKTAEDLTIW PAFAQAAINA IRTIDAANPI YVAGNLWDSA MFVGIKNPGF
PLMGRNLIYE VHMYLDAYSN GAAFDYDTEV AKNYSAGFGV GSITESTGAD RIKIATDWAK
ANGVKLALTE TGMPIDDLRW QAMFSRAVSY ARAAGCEIYS WMGGNHWPIR NYAINHVPGW
HQNKTLEPSV SGPLKASAGI AKAVLFDDGP GYALAGTSIT ITVYARGNLA APVSIGVSSN
NGGTFSKTVL IIPAGANGQD TFTYVPESNR IATLTYTSDG QLSGQVPPQR KIYSLNDPVA
YAATSLPGAA MAILAKYSAA KWDLADGYTD YLQGAPAAAG EPVRAISDSG FGSSAGNAME
MINWVNKANG GMGAMSVPVM RVTNGKKNSD HAVYNTWGFW CKKSLKMQGI QPNPRNRVPY
NLEDSHFVIA AVSVPGQYNT GVLFQASQAE ARFTSELNFT NSCPGAKWVD ASGQTVQLAS
STKLPVNVPS VVSFTCAPGS QKLRVNSALV AGASASFSPS AFNQMLIGWG YLSYYPRDGF
RGNIYAVISG KGAPTAEELG VLEKYLASTA GVAI
|
|---|
| |