| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4358 |
|---|
| Symbol | |
|---|
| ID | 4012968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4596945 |
|---|
| End bp | 4598105 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637944008 |
|---|
| Product | mandelate racemase/muconate lactonizing enzyme |
|---|
| Protein accession | YP_551145 |
|---|
| Protein GI | 91790193 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.370383 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.442664 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA GCAGCGTAAA GGTCTACTTG ATCAAAAGCG GTCTACTGCA CCCAGTCATC
GTGCGAATCG ACACCGACGA GGGCATCTAT GGCGTCGGCG AGGCTGCAAT TGCGTATGGG
TTAGGCGGAA CAGCTGCTGC CGGCATGGTT AAAGACCTTG CGAACCGGAT TCTGATTGGC
CGGGATCCGC ACGCCATTGA AGCAATCTGG TCGGAGATGT ATGACCATTC TTTCTGGGCA
AAGGGAGGCG GCCCCATCGT GTTCGCTGGC ATCAGCGCCA TCGAACAGGC CCTCTGGGAC
ATCAAAGGTA AAGCGCTCAA TGTCCCTGTC TACCAACTGC TGGGCGGCAA GGTTCGTGAT
GCCATCCGGG TCTACGCCAA CGGGTGGAGC ACCGAGGCAA CGACAGCCGC AGATTTCGCG
CGCGCCGCAG AGCGGCCACT CAAAGACGGC TATACGGCGC TGAAGTTCTA CCCGCTGGCA
ATGCCAGACT CCAAAGGGAC CATTTGTCAC CCCACGCACC GGGCGCTGGA TCGCGAGCAG
GTACGTTTGG CTTTCGACCG CGTGAGAGCT GTGTGCGATT TGGCTGGCCC GGATATCGAC
ATCATGCTAG ATCTAAGCGG CGCGCTGACT ACGGACGAGA CCATCCGGCT GTGCCAGCGC
TACGAAGATC TGGGCATTGA GTTCATCGAG GAGCCGGCCG ACCCATTTGA CTTGGGCGCG
CTCAAGAAGA TTTCAGAGAA GGTCAATATC CCCATCGCGG TGGGCGAACG TCTCTATACA
CGTTACGGTT TTCGCAAATT AATGGAAATG CACGTAGCAG ACACAGTCCA GCCGGATGTT
GGTAATACCG GCGGCATCAT GGAAACCAAG AAGATCGCGG CAATGGCCGA GGCCTATAAC
CTGCGCGTCG CGCCGCACAA CTGCGCGAGT CCAGTCTGCA CCGCAGCAAC ATTGCACATC
GCGGCGAACG TGCCGAACTT TTCAATACTG GAAATGTATC CCTACTCGAA TCGGCATTCC
GGCTATCTAG AGTTCACCGA CGTGATACCC GAGCACGAGG TGAAGAACGG GTACCTCAAA
GTGCCGGACA AGCCCGGAAT AGGCATCGAA CTTATTGAGG AAAAAATCGA CACCTATCTT
TGGGCAGAGA TTAAAACATG A
|
|---|
| Protein sequence | MKISSVKVYL IKSGLLHPVI VRIDTDEGIY GVGEAAIAYG LGGTAAAGMV KDLANRILIG
RDPHAIEAIW SEMYDHSFWA KGGGPIVFAG ISAIEQALWD IKGKALNVPV YQLLGGKVRD
AIRVYANGWS TEATTAADFA RAAERPLKDG YTALKFYPLA MPDSKGTICH PTHRALDREQ
VRLAFDRVRA VCDLAGPDID IMLDLSGALT TDETIRLCQR YEDLGIEFIE EPADPFDLGA
LKKISEKVNI PIAVGERLYT RYGFRKLMEM HVADTVQPDV GNTGGIMETK KIAAMAEAYN
LRVAPHNCAS PVCTAATLHI AANVPNFSIL EMYPYSNRHS GYLEFTDVIP EHEVKNGYLK
VPDKPGIGIE LIEEKIDTYL WAEIKT
|
|---|
| |