| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4225 |
|---|
| Symbol | |
|---|
| ID | 4013095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 4445429 |
|---|
| End bp | 4447114 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637943872 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_551015 |
|---|
| Protein GI | 91790063 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.689308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGC ATTGGCTCAC AAGTTACCCC GAGGGCGTCC CTCACGAAAT CGATCCGGAA
CAGTTCCGTT CGCTCAACCA GCTGCTGGAA GACTCCTTCA GGAAGAATGC GTCGAAACCG
TTTTCGGTCT GCATGGACCG CTGGATGTCT TACGCCCAGC TGGATGACTT GTCGTCGGCC
CTGGGGGCCT GGCTGCAAAG TCTGGGGCTG GAGCCGGGCG CACGGGTGGC CATCATGCTG
CCCAACATTC CCCAGTTCGC GGTAACCATG GCAGCCGTGC TGCGTGCCGG CTATACCTGC
GTGAACGTGA ATCCGCTCTA TACCGCGCGT GAACTGGAGC ACCAGCTCAA GGACTCCGGC
GCCACCACGA TTGTCATTCT CGAAAACTTT GCGGGCACGC TGGCCGAAGT CGTTGAGCGG
ACGCCGGTCA AGAACATCGT CATGGCGTCC ATGGGCGATC TGCTTGGCTT CTGGTACGGA
GCCTGGATCA CCTTTGCAGT CCGCCACCTG GCCAAGCTGG TACCGGCTTA CAAGCTGCCG
CTCGGTGACG GCCGTACCGT GACCACTTTC AGCCAGGCTG TTGCCGACGG CGCCAAGCGC
TCGCTCGCGC CTGCGCAAAG CAATCTGGAT TCGATCGCCT TTCTGCAGTA CACCGGCGGG
ACCACGGGCT TGTCGAAGGG AGCGGTACTC ACCCACCGCA ATATCGTCGC CGCCATCTTG
CAGGCCGAAG CCTGGTTTAC TCCGGCGCTG CGGCGGATCG GCGATGTGAG CACAACGAAC
AACATTGCGG CACTGCCGCT GTATCACATC TTCGCGCTCA CCCTGTGCCT GCTCACCATG
CGCTGGGGCG CGCATTTGAC ACTGGTCCCG AATCCGCGTG ACTTTGGCAA ATTCATTGAG
GTGCTGAAAA AGCGGCCCTT CCATTTGCTG CCGGGAGTCA ACACCCTGTT CAATGCCTTG
CTGCAGCATC CACAGTTCAA GACTGTGGAC TTTTCCAGCC TGTGCGTCTC CCAGGCAGGT
GGCATGGCGG CGTCTGCGGG TACCGCCAAG CAGTGGCTGC AAGTCACCGG CTGCCCCATG
ATCGAGGGCT GGGGCATGAG TGAGACCTGC GCCATCGGGA CGAACAACCC GGTGACAAAC
CGGGAATTCA CCGGCACCAT CGGGTTGCCG CTACCCAGCA TTGAGCTGGC CATCAAGGGC
GAGGATGGCA ACTCACTTGC GCCCGGCGAG TCGGGCGAGA TCTGCATCAG GGGCCCGCAG
GTGATGACCG GCTATTACCG CCAGCCAGAC GAAAATGAGA AGGCGTTTAC CCGCGACGGT
TTTATGCGCA CCGGCGACAT CGGCATCATG GATGAGCGCG GGTACACCAA AATTGTGGAC
CGCAAGAAGG ACATGATCAT TGTTTCGGGT TTCAATGTCT TCCCGAATGA GCTGGAGAAC
GTGATTTCCT TGTGCCCCGG CGTCGTGGAG TGCGCGGCCA TTGGGATCGC TGATGACAAG
CAGGGCGAAG CCATCAAGGT GTTTGTCGTG AAGAACGACC CTACGCTGAC TGAAGATGAT
GTAAGCGCCT ATTGCAAACA GCATTTCACG GGCTACAAAC GTCCCAAGTA CATCGAATTT
CGCGATGATC TTCCCAAATC CAATGTCGGG AAAATCCTCA GGCGCGAACT CCGCGCAGCG
GCCTGA
|
|---|
| Protein sequence | MNRHWLTSYP EGVPHEIDPE QFRSLNQLLE DSFRKNASKP FSVCMDRWMS YAQLDDLSSA
LGAWLQSLGL EPGARVAIML PNIPQFAVTM AAVLRAGYTC VNVNPLYTAR ELEHQLKDSG
ATTIVILENF AGTLAEVVER TPVKNIVMAS MGDLLGFWYG AWITFAVRHL AKLVPAYKLP
LGDGRTVTTF SQAVADGAKR SLAPAQSNLD SIAFLQYTGG TTGLSKGAVL THRNIVAAIL
QAEAWFTPAL RRIGDVSTTN NIAALPLYHI FALTLCLLTM RWGAHLTLVP NPRDFGKFIE
VLKKRPFHLL PGVNTLFNAL LQHPQFKTVD FSSLCVSQAG GMAASAGTAK QWLQVTGCPM
IEGWGMSETC AIGTNNPVTN REFTGTIGLP LPSIELAIKG EDGNSLAPGE SGEICIRGPQ
VMTGYYRQPD ENEKAFTRDG FMRTGDIGIM DERGYTKIVD RKKDMIIVSG FNVFPNELEN
VISLCPGVVE CAAIGIADDK QGEAIKVFVV KNDPTLTEDD VSAYCKQHFT GYKRPKYIEF
RDDLPKSNVG KILRRELRAA A
|
|---|
| |