| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4053 |
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| Symbol | |
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| ID | 4013264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 4254572 |
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| End bp | 4256524 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637943701 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_550844 |
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| Protein GI | 91789892 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.330855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.423822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTC GCAAGGAGCT CTGGTTCGGC CTGACCTTCA TGGTGCTGGT GGTAGTCGGC
GCCATCGGCC TGCTGCTCAG CGTAGAGAAA ATAACCAACG GACACCTCGG CCTGCTGATG
CTGTCGCTGG TCGTGATGGC CATCATGCTG GGTTTTCCTA CGGCTTTCAC GCTGATGGGC
ATGGGCATGA TTTTTACCTG GCTGGCCTAC GACAGGGACA CCACCAGAAC GCTGGACCTG
ATGGTCCAGG CGGCTTTCAA GACCATGTCC AACGACGTGC TGATCGCCAT ACCGCTCTTT
GTCTTCATGG GTTATCTGGT CGAGCGGGCC AACCTGATTG AAAAGCTTTT CAAGAGCCTG
CATCTGGCCA TGGCCAGGAT ACCGGGCTCG CTCGCCGTGG CAACCCTGGT GACCTGTGCG
ATTTTCGCCA CCGCGACCGG TATTGTGGGC GCAGTGGTCA CGCTGATGGG GCTGCTGGCG
CTGCCCGCCA TGCTGCGCGC CGGCTACAGC GTGCCGCTGG CTGCCGGCGC GATCACAGCG
GGCGGCTGCC TGGGCATTCT GATCCCGCCC TCCGTGCTGC TGATCGTTTA TGGCGCCACG
GCGGGCGTTT CCGTCGTGCA ACTGTATGCC GGTGCGTTTT TTCCCGGCCT GATGCTGACC
GGCCTGTACA TAGGCTATGT CATTCTGATC GCCAAACTCA AGCCCCAATG GGCGCCTCCG
CTGTCGGCCG CCGACCGCGT GGTCACGCTG CCCCCGCTGA CGCAGAAGTT GACGGACAGC
ACCGCCACGC ATGCGCTCAC GAGCCTGTTC AGCGCGCTGA AGGGCAAGCG CAATGCCGAG
GTACCACTCG GCCACATTGT GCGGCAGCTC ACGATTGTGG TCCTGCCGGG CCTGCTTTTC
CTGCTTGTTC TCCTGACCAG TTACCGGGCG GTCACCACGG TTGACGCCGA AGCGGTCTAT
GACATCCAGC AGATAGGCGC CTACAGCGCG ACCGAATCTT CAGCCACCGA CACCGGCGGT
TTGCAGGAGC CTCCGGCAGA AGGCGGCCTG CAAGAGCCTC CTTCATCGGA CGGCGTGCAG
GAGCCGCCCG GCACCGCTGC TGCGCCCGCC GCACCCGCAC CCGCACCCGC ACCCGCGGCC
GCCAGCATCG CCGAGCCACC CGCGGCCGAC CAGGCCCCGG CAGCAGGCGC GAGCACCCGT
GATGCGCCCA CCTGGTGGTG GGTCACATTT GCCATCCTCG GCGCCCTGGT CACCCTGTTC
TACCTGTTCC TGAGCTTTGC GCGGCTCGAG ATCTTCAAGA TGCTCCTGTC CTCGTTTTTC
CCGCTGATGA TCCTCATCAT CGCCGTACTG GGCTCCATCG TGATGGGACT GGCCACGCCG
ACCGAGGCAG CGGCGATGGG CGCGCTGGGC GGTTTCGTGC TGGCGGCAGC GTACAGGCGG
CTGACGCTGT CGGTGGTCAA GGAGTCGGTG TTTCTGACGG CCAAGACGTC CGCCATGGTG
TGCTGGCTGT TTGTAGGCTC GGCCATCTTC TCGGCGGCTT TTGCGCTGCT GGGCGGCCAG
GAACTGGTGG AGACCTGGGT TCTCGGCATG AACCTGAGCA AGACGCAGTT CCTGGTCATG
AGCCAGGTGA TTATTTTCAT TCTGGGCTGG CCGCTGGAGT GGACGGAAAT CATCGTTATT
TTCATGCCCA TCTTCATCCC GCTGCTCGAC AATTTTGGCG TGGACCCGCT GTTCTTCGGG
TTGCTGGTGG CGCTGAACCT GCAGACAGCC TTCCTGAGCC CGCCGGTGGC GATGGCCGCG
TTTTACCTCA AAGGCGTTGC ACCCAAACAT GTCACGCTGA ACCAGATATT TTCAGGGATG
ATTCCATTCA TGGGCATCCA GATTCTGGCC ATCGTGCTGT TGTACCAGTT CCCGCAGATC
GGACTGTGGC TGCCGCAACT GCTGTACAAA TAA
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| Protein sequence | MKIRKELWFG LTFMVLVVVG AIGLLLSVEK ITNGHLGLLM LSLVVMAIML GFPTAFTLMG
MGMIFTWLAY DRDTTRTLDL MVQAAFKTMS NDVLIAIPLF VFMGYLVERA NLIEKLFKSL
HLAMARIPGS LAVATLVTCA IFATATGIVG AVVTLMGLLA LPAMLRAGYS VPLAAGAITA
GGCLGILIPP SVLLIVYGAT AGVSVVQLYA GAFFPGLMLT GLYIGYVILI AKLKPQWAPP
LSAADRVVTL PPLTQKLTDS TATHALTSLF SALKGKRNAE VPLGHIVRQL TIVVLPGLLF
LLVLLTSYRA VTTVDAEAVY DIQQIGAYSA TESSATDTGG LQEPPAEGGL QEPPSSDGVQ
EPPGTAAAPA APAPAPAPAA ASIAEPPAAD QAPAAGASTR DAPTWWWVTF AILGALVTLF
YLFLSFARLE IFKMLLSSFF PLMILIIAVL GSIVMGLATP TEAAAMGALG GFVLAAAYRR
LTLSVVKESV FLTAKTSAMV CWLFVGSAIF SAAFALLGGQ ELVETWVLGM NLSKTQFLVM
SQVIIFILGW PLEWTEIIVI FMPIFIPLLD NFGVDPLFFG LLVALNLQTA FLSPPVAMAA
FYLKGVAPKH VTLNQIFSGM IPFMGIQILA IVLLYQFPQI GLWLPQLLYK
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