Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_3964 |
Symbol | |
ID | 4013370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | + |
Start bp | 4156262 |
End bp | 4157248 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637943613 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_550756 |
Protein GI | 91789804 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.363818 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAAAC GACTGACGAT AAAAACCATG GCCCTATGCG CAATATTGGC GGGAACCATG GGGTCATTTG GCATCGCCCA TGCGCAAACC AAGCTGAAGT GGGCCCACGT GTATGAAACG TCGGAGCCCT ATCACAAGTG GTCGGTCTGG GCGGCAGACG AGATCAAGAA GCGCACCAAC GGCCGCTATG AGATCCAGGT GTTCCCGGCT TCCACGCTGG GCAAGGAAAG CGACATCAAC CAGGGCCTGC AGCTGGGCAC CGTCGACATC ATCATCTCGG GCGCCTCCTT CGCTGCCCGC AGCTTTCCGC GCATCGGTGT GGGCTACTAC CCCTACACCT TCCGGGATCC AGAGCACCTG CTCAAGTATT CGAAGAGCGA TGTCTTCAAG GAACTGGCCG ACGGCTACAA GCAGAAAACC GGCGTGCAGA CCGTCGCCGT CACCTACTAC GGCGCACGCC ACTCCACCAG CAACAAGCTC TTCAAGAACT GCGATGAAAT GAAGGGCCTG AAGATGCGGG TGCCCGACGT GCCCGCCTAC ATGGCCTTGC CGCGCGCCTG CGGCGCCAAC CCGACGCCGA TCGCTTTTGC CGAGGTCTAC CTGGCCCTGC AAAACGGCAC GGTCGATGCG CAGGAAAATC CGCTGCCCAC CATCGAAGCC AAGAAGTTCT ACGAGGTCCA GAAGAACATC ATCCTGACCG GCCACATCCT CGATTCGCTG GTGACGCAAG TCGGCCCCCA CGTCTGGACC AAGCTCAGCG ATGCGGACAA GAAAATCTTC ACCGACGTGA TGCAGGAAGC AGCGGCCAGC GCCACGGCCG ACATCAAGAA GCGTGAAGGC GAGCTGGTTG ACGAATTCAA GAAAAAGGGC CTGAACGTCG TCACGGTCAA CAAGGACGAG TTCCGCGACC GCATCGTGAA AGCCGTGGAC ATGACGTCGA TGGGCTACGA CAAAAAGGAT TGGAACCGCA TCCAGGCCCT CAAATAA
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Protein sequence | MTKRLTIKTM ALCAILAGTM GSFGIAHAQT KLKWAHVYET SEPYHKWSVW AADEIKKRTN GRYEIQVFPA STLGKESDIN QGLQLGTVDI IISGASFAAR SFPRIGVGYY PYTFRDPEHL LKYSKSDVFK ELADGYKQKT GVQTVAVTYY GARHSTSNKL FKNCDEMKGL KMRVPDVPAY MALPRACGAN PTPIAFAEVY LALQNGTVDA QENPLPTIEA KKFYEVQKNI ILTGHILDSL VTQVGPHVWT KLSDADKKIF TDVMQEAAAS ATADIKKREG ELVDEFKKKG LNVVTVNKDE FRDRIVKAVD MTSMGYDKKD WNRIQALK
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