| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3920 |
|---|
| Symbol | |
|---|
| ID | 4013404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4114543 |
|---|
| End bp | 4115226 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637943570 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_550713 |
|---|
| Protein GI | 91789761 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.62554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.13671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCAG TCACCCCCTT TCAAGCCGGC GGCAACACGG CCCGGCGCCC GCGCGGCCGG
CCGCGCAAGA CGCTGGGCGA ACGCGACGAC GGCAACCGCC GCATGGAGCT GGTCAGCGCC
GCGGCGAAGC TGTTTCGCCG CAAGGGATTT GACGGCGCCA GCACCCGCGA CATCGCGGCC
GCGGTGGGCA TGCACAGCGG CTCGCCCTTT TATCACTTCA AGAGCAAGGG GGCACTGCTT
CACGCGGTGA TGGAGCAGGG CATGCGTTCG GCCCTGGACC GGCAGACCGC GGCCCTGCAG
TCTGCCAGCC AATCAAAGTT CGATGCGTCT TCCTTGCTGC GCGTGCTGAT CCGCAACCAC
TTCGATGTGC TGCTGGGGCC CGGCAGTGAC TTCATTCCGG TGATGCTGTA CGAGTCACGC
TCCCTCACGG CGCGGCAGCG TGCGTCCATC GCCCGGCTGC GAAGCGACTA TGAGTCGAAC
TGGGAGCCGG TGCTCGAGGC CCTGGCCGAA CAGGGCCGGC TCCACGGGCC GGTGACGCTG
GCGCGCCTGT TGATCTTCGG TGCGCTGAAC TGGTCGGTCC AGTGGTTTGA CGCAAAAAAA
GACGCGTCGC TGGATGACCT GACCGACGCG GCCCTGGCAC TGTTTCTGCA CGCCCCGATG
CGGGCCCGAA AAGTCACTGC ATGA
|
|---|
| Protein sequence | MDAVTPFQAG GNTARRPRGR PRKTLGERDD GNRRMELVSA AAKLFRRKGF DGASTRDIAA
AVGMHSGSPF YHFKSKGALL HAVMEQGMRS ALDRQTAALQ SASQSKFDAS SLLRVLIRNH
FDVLLGPGSD FIPVMLYESR SLTARQRASI ARLRSDYESN WEPVLEALAE QGRLHGPVTL
ARLLIFGALN WSVQWFDAKK DASLDDLTDA ALALFLHAPM RARKVTA
|
|---|
| |