| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3905 |
|---|
| Symbol | |
|---|
| ID | 4013429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4099724 |
|---|
| End bp | 4100686 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637943556 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_550699 |
|---|
| Protein GI | 91789747 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00200094 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.196603 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCA AATGGCTGGA AGATTTCGTC AGTCTTGCTG AAACCCGCAG TTTCAGCCGC
TCGGCCCAAC TGCGTCATGT GACCCAGCCG GCCTTTTCGC GGCGCATCCA GGCGCTCGAA
GCCTGGGCCG GCACCGACCT GGTTGACAGA AGCTCCTATC CCACGCGCCT GACGCCGGCC
GGCGAGACGC TGTACAGCCA GTCGCTGGAA ATGCTGCAGG GTCTGCAGTC CACCCGCGCC
ATGCTGCGCG GCCATACCTC GGCCGGGCAG GATGTCATCG AGTTCGCTGT GCCGCATACG
CTGGCCTTTA CCTTCTTCCC GGCGTGGGTC AGCAGCCTGC GCGAGAAGTT CGGGCCGATC
AAGAGCCGGC TGATCGCGCT CAACGTGCAT GACGCGGTGT TGCGGCTGGT GGAGGGCAGT
TGCGACCTGC TGATCGCCTA CCACCATGAC TCCCAGCCTT TCCAGCTGGA CCCCGAGCGC
TATGAAATGG TGACGCTGGG CCAGGAAGTG CTCGCGCCGT TTGTGAAGGC CAATGCCGCC
GGCGAGCCCG AGTTCAGCCT GCCGGGGCGG GCCGGGCAGC CTTTGCCCTA CCTGGGCTAC
GCGCCCGGCG CCTATCTGGG GCGGGTGGTC GACCTGATCC TCAAGCAGTC CAGTACCGCG
ATTCACCTGG ACCGGGTGTA TGAAACCGAC ATGGCCGAGG GCCTGAAGGC CATGGCGCTC
GAGGGGCATG GCATCGCATT TTTGCCGCTC AGTGCCGTCA GGAAAGAACT CCGGGCCAAA
AAGCTGGTCA GCGCGGGCGG TAACCTGGAG ATGACCATGG ACGTCCGCGT CTACCGCGCA
CGGCCCACAT CCAAAGAGGC GGCCAAAAGC CATGCACAGG CCCTGTGGAC CTATTTGCAG
ACCTCAACCG GCCCCCGGGA CAAGGCGGCG GGCCGGGGCG GAATCCAGCC GCCGACCCGA
TAG
|
|---|
| Protein sequence | METKWLEDFV SLAETRSFSR SAQLRHVTQP AFSRRIQALE AWAGTDLVDR SSYPTRLTPA
GETLYSQSLE MLQGLQSTRA MLRGHTSAGQ DVIEFAVPHT LAFTFFPAWV SSLREKFGPI
KSRLIALNVH DAVLRLVEGS CDLLIAYHHD SQPFQLDPER YEMVTLGQEV LAPFVKANAA
GEPEFSLPGR AGQPLPYLGY APGAYLGRVV DLILKQSSTA IHLDRVYETD MAEGLKAMAL
EGHGIAFLPL SAVRKELRAK KLVSAGGNLE MTMDVRVYRA RPTSKEAAKS HAQALWTYLQ
TSTGPRDKAA GRGGIQPPTR
|
|---|
| |