Gene Bpro_3885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_3885 
Symbol 
ID4013448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp4077828 
End bp4078691 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content64% 
IMG OID637943536 
ProductTatD-related deoxyribonuclease 
Protein accessionYP_550679 
Protein GI91789727 
COG category[L] Replication, recombination and repair 
COG ID[COG0084] Mg-dependent DNase 
TIGRFAM ID[TIGR00010] hydrolase, TatD family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.932753 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTTCT GGATTGACAC ACACTGCCAC CTCGATGCCG GGGAGTTCTC GCCAGATGTG 
GCCGCAGTTC GTGCGCGGGC TACCGTCAGG CAGGTCGCGC ATTGCGTGCT GCCGGCTGTG
GCAGTCAGCA ACTTCGCGGC CGTGCGCTTG CTGGCGCATG AGTTTTCGGA CAGTTACGCA
TTGGGCATAC ATCCGCTTTG CGTGCCCGAA GCACAAGAGG CCGACCTGCT GGCGCTGGAT
GCGGAACTGA CCCTCAGAAA GTCCGACCCG CGCCTGGTGG CGGTGGGTGA AATAGGGCTT
GACTATTTTG TGCCCGCATT GACGCAAAGC CCCATGCGCG AGCGCCAGGA ATATTTCTAC
CGCGAGCAGC TCAAGCTGGC GCGCAAGCAC GGCTTGCCGG TCATCCTGCA TGTGCGGCGA
TCGGCCGACA AGCTGCTCAA ACATTTGCGT GAGCTGGTGC CCCATCACCC GGAGCACCCG
GAGGACGGCT GGCGTGGCAT TGCCCATGCC TTTAACGGCA GCGAACAGCA GGCGATGGAG
TTCGTCAAGC TGGGTTTCAA GCTGGGCTTT GGCGGTGCCG TCACGTTTGA GCCCGCCCGG
CAGCTCAGGC ACCTGGCCGC CCAGTTGCCG CTGGAGGTGC TGGTGATGGA AACCGATTCA
CCCGACATTC CACCGCACTG GCTTTACACC ACGGCAGCGC AGCGTGCGGC CGGGCAGGGC
CAGGGCCGCA ATGAGCCGGG CGAGTTGCCC CGCATTGCAC AGCAAGTGGC GAGTCTGCGC
GGCATCTCGG CCGAAGCGTT GGCCAGCGCC ACCAGCGCCA ACGCGCTAGA GGCGCTGCCC
CGGCTCAAGG CGCTCGTGTC GTGA
 
Protein sequence
MTFWIDTHCH LDAGEFSPDV AAVRARATVR QVAHCVLPAV AVSNFAAVRL LAHEFSDSYA 
LGIHPLCVPE AQEADLLALD AELTLRKSDP RLVAVGEIGL DYFVPALTQS PMRERQEYFY
REQLKLARKH GLPVILHVRR SADKLLKHLR ELVPHHPEHP EDGWRGIAHA FNGSEQQAME
FVKLGFKLGF GGAVTFEPAR QLRHLAAQLP LEVLVMETDS PDIPPHWLYT TAAQRAAGQG
QGRNEPGELP RIAQQVASLR GISAEALASA TSANALEALP RLKALVS