| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3882 |
|---|
| Symbol | |
|---|
| ID | 4013445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4074652 |
|---|
| End bp | 4076463 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637943533 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_550676 |
|---|
| Protein GI | 91789724 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.712323 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG TGATACCCCC CCCACGCCCC ACTTCCTCGC GGGACTCTCA GGGTAAAAAA
GTCCATGCCG GCCCGCTCGA CTGGCGCAAG CTGGTCGAGT GGCTCAGTGA AGACGGCGTG
ATCAGCAGCG CCGAGGCGCA GCGCACCATT GCGCGCTGCT CACAGGTGCA AAGCGCCCAG
GCTCCCCTGA TCCGGCTGGC CAGTGTCAGC ATGGTGCGCG TGGCCGACGG CAAGCCGCTC
GACATCGAAA CCATTGCCCA GTGGCTGGCC GGCCGGGCCG ATCTCAACTA CCTGAGGATT
GACCCGCTGA AGGTGGATGT GGGCAAGGTG GCCGACACCA TGTCAGCGGT GTATGCCGAG
CGGCACAAGG TGTTGCCGGT GCAGGTGACC CCCCGGGAGG TGGTGATTGC CACGTCCGAG
CCCTTTGTCA CGGACTGGGT GGCGGAGGTT GAGCGCCAGG CCAAGCGCAG CGTGCGCCTG
GTGGTGGCCA ATCCGCTGGA AATTGCCAAA TACACGGCCG AGTTTTTTGC GCTGGCCAAA
TCCGTCCGGG CGGCGCTCAA GTCGGGCGGC ACCTCGGGCT CGGCCAGCTT TGAGCAGCTG
GTGGAGCTGA ACAAGAGCAA CAAGCAGCTC GATGCCAACG ACCAGGGGGT GGTGCAGGTG
GTGGACTGGC TCTGGCAGTA CGCCTTTGAC CAGCGCGCCA GTGACATCCA CCTGGAGCCG
CGGCGCGAGC AGGGTGTGAT CCGTTTCCGG ATTGACGGTG TACTGCATCC GGTCTACCAG
TTGCCCATGG GCGTGCACAA CGCCATGACG GCGCGCATCA AACTGCTGGG CCGTATGGAT
GTGGTTGAAA AGCGACGCCC GCAGGATGGC CGCATCAAGA CCCGCAACCC GCGCGGCGAC
GAAATTGAAA TGCGCCTGTC AACCCTGCCC ACGGCCTTCG GCGAAAAGAT GGTGATGCGG
ATTTTTGACC CGGACACCAC GGTCAAGGAC CTGGACGCGC TGGGTTTTTC GCAGCATGAC
GCGGAGCGCT GGGAGCAACT GCTCAAGCGG CCCTACGGCA TTGTTTTAGT CACCGGGCCG
ACCGGCTCCG GCAAGACCAC CACGCTGTAC TCCACGCTCA AGCGTCTGGC GACTGAAGAG
GTCAATGTCA GCACGATTGA AGACCCGATC GAGATGATCG AGCCGGCGTT CAACCAGACG
CAGGTGCAGG CGCACCTGGA TTTCGATTTC CCCGAAGGGC TGCGCGCGCT GATGCGGCAG
GACCCCGACA TCATCATGGT CGGCGAAATC CGCGACCTGC AGACCGCGGA AATGGCCGTG
CAGGCCGCGC TGACGGGCCA CCTGGTCTTC AGCACGCTGC ACACCAACGA CGCGCCCTCG
GCGGTCTCGC GCCTGATGGA GCTGGGCGTG CCTGCCTACC TGATCAACGC CACGCTGCTG
GGCGTGCTGG CGCAGCGGCT GGTGCGCACC CTGTGCGCGC AATGCCGTGA AAAGGACGAA
GGCAGCTCGC GTGAAGCGTT GGCGGAAGTC GTCAAACCCT GGCAAATCAA CGGGGCTTAC
CGGCCCTACA AGCCGGCCGG CTGTGTCGAT TGCCGCATGA CCGGCTTTCT GGGTCGGATG
GGGCTGTACG AGTTGCTGAC GGTGACCGAA GCCTTCAAGG ACAAGGTCAC CCGGGAGCCG
AATATTGACG CGCTGCGGCG CCAGGCGGTG ACAGACGGCA TGCGCCCGTT GCGGCTGGCG
GGTGCGCTCA AGGTGGCGGA AGGGGTGACC ACCATCGAGG AAATCCTCTC CACCACCCCG
CCGATGTCCT GA
|
|---|
| Protein sequence | MSAVIPPPRP TSSRDSQGKK VHAGPLDWRK LVEWLSEDGV ISSAEAQRTI ARCSQVQSAQ
APLIRLASVS MVRVADGKPL DIETIAQWLA GRADLNYLRI DPLKVDVGKV ADTMSAVYAE
RHKVLPVQVT PREVVIATSE PFVTDWVAEV ERQAKRSVRL VVANPLEIAK YTAEFFALAK
SVRAALKSGG TSGSASFEQL VELNKSNKQL DANDQGVVQV VDWLWQYAFD QRASDIHLEP
RREQGVIRFR IDGVLHPVYQ LPMGVHNAMT ARIKLLGRMD VVEKRRPQDG RIKTRNPRGD
EIEMRLSTLP TAFGEKMVMR IFDPDTTVKD LDALGFSQHD AERWEQLLKR PYGIVLVTGP
TGSGKTTTLY STLKRLATEE VNVSTIEDPI EMIEPAFNQT QVQAHLDFDF PEGLRALMRQ
DPDIIMVGEI RDLQTAEMAV QAALTGHLVF STLHTNDAPS AVSRLMELGV PAYLINATLL
GVLAQRLVRT LCAQCREKDE GSSREALAEV VKPWQINGAY RPYKPAGCVD CRMTGFLGRM
GLYELLTVTE AFKDKVTREP NIDALRRQAV TDGMRPLRLA GALKVAEGVT TIEEILSTTP
PMS
|
|---|
| |