| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3507 |
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| Symbol | |
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| ID | 4013809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 3706582 |
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| End bp | 3707952 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637943169 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_550313 |
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| Protein GI | 91789361 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.377172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAAA CCATACGCTA CACCCTGCTG TCGCTGCGCG ATCTGGCGGT CTCTGCCGGT
CCCTTCATTT TGCTGGCCGC CACGCTGCTG GTGCTGGCCT ACTGGTGGCT GGACCCCAAC
CCGCCCAAGC GGGTGGTACT GGCCACCGGC CCGGCACAAA GCGCCTATGA AGAATTTGGC
AAGCGCTACG CGCGCATTCT TGCGAAAGAC GGCATCGAGG TCGTGCAGCT GCCTTCGGAA
GGGTCGGCAA CCAATTTGCA GCTGCTGCGC GAGGGCAAGG CCGATCTCGG TTTTGTGCAG
GGCGGCACCA GCGAGGCAGG CATCGAAAAT GACGGGCAGC TGGAATCGCT GGGCAGCCTG
TTTCTGGAAC CGGTGTGGCT GTTTTACCGG GAGGCGGCTG CGCGCAAAGT CGCATCCGCA
GCGCCGCGCG GCAATGCCTC GGCAGACGGT GCCGCCGCCG GCTCTACCCT CAGCGCCCTG
ACACAACTGC AAGGCTTGCG CGTCAACGTC GGCACACCCG GCAGCGGTGT GCCCAACCTG
GTGAACAAAT TGCTGGAGAG CAACCGCATT GACAGCAGCA CCCTGAAAAT CTCCCGGCTG
GAGCAGACCC CGGCCACCGT GGCCTTTCTG GGCGGCGAGC TGGACGCCAT TGTGTTCGCC
TCGGCACCCG AATCGCTGAT GGTGCAGATG CTGCTGCAGA CACCCGGCGT CAAGCTGATG
GATTTTGCGC AAAGCGAAGC CTACTCGCGG CGCTTTGAGT TCCTGAGCCC CGCGGTGCTG
CCGCGCGGCG TGGTGGATCT GGCCACCAAT ATTCCGCCGC AGGATGTCCG CCTGGTGGCG
CCCACCACCA CCCTGCTCAC GCGGGCCGGC ACACACCCGG CGCTGCTGCA GCTGTTTGCA
CTGGCCGGTA ACGAGATCCA CGGCAGTGCC GGCTGGTTCA AGCGGGCGCG CGAATACCCG
AATGTGAAGA ACAACGAATT GCCGGTTGCC AAAGAAGCCG AGCGCAGCAT TCAGGCCGGT
GCGCCGCTGC TGCAGCGCTA CCTGCCCTTC TGGGTGGCCA ACCTGGTCGA GCGCATGTGG
CTGGTCATGG GCATCATCAT CGCGGTGCTG TTGCCGCTGT CGCGCATTGT GCCGCCACTC
TACGAGTTTC GAGTACGCTC GCGCATTTTC AGGTGGTATG GCCAGTTGCG TGATATTGAA
AGCCGCATTG AGAGCACGGG CGAAAACACG CGCAATAGCG CGCTGCTCGA AGAACTCAAC
AGCCTGGAAA ATCGCGCTGA AAAAATCAGC GTGCCGCTGT CATACACCGA CGAGCTGTAT
GCGCTGCGCA GCAATATTCA TCTGGTGAGG AAGAAGTTGC AGAGGTTGTA G
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| Protein sequence | MPKTIRYTLL SLRDLAVSAG PFILLAATLL VLAYWWLDPN PPKRVVLATG PAQSAYEEFG
KRYARILAKD GIEVVQLPSE GSATNLQLLR EGKADLGFVQ GGTSEAGIEN DGQLESLGSL
FLEPVWLFYR EAAARKVASA APRGNASADG AAAGSTLSAL TQLQGLRVNV GTPGSGVPNL
VNKLLESNRI DSSTLKISRL EQTPATVAFL GGELDAIVFA SAPESLMVQM LLQTPGVKLM
DFAQSEAYSR RFEFLSPAVL PRGVVDLATN IPPQDVRLVA PTTTLLTRAG THPALLQLFA
LAGNEIHGSA GWFKRAREYP NVKNNELPVA KEAERSIQAG APLLQRYLPF WVANLVERMW
LVMGIIIAVL LPLSRIVPPL YEFRVRSRIF RWYGQLRDIE SRIESTGENT RNSALLEELN
SLENRAEKIS VPLSYTDELY ALRSNIHLVR KKLQRL
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