| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3492 |
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| Symbol | |
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| ID | 4013833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 3692908 |
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| End bp | 3694545 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637943154 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_550298 |
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| Protein GI | 91789346 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.341782 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGA AATATCTCAT TGCCGCGCTG CTTGCTGCGG GCGTGCTTGG CGCCGCCGGT
TACGGTCTGT ACACCCTGGG GGTGAAAAAG GGCGGCACCA TGCCTGCCGC CAGTGCACCT
GCCAACGCTG GCAGCCAAAG TGCTGCGCCC GCGGCCGCTC CCCAGAGCGT CGCCGATGGT
GAAGAGGCGA CCCGCCGCCA TATCAGCGCA GGCCTCAAAG CGGGGGATAC CGATCCGATT
ACCGGCAGCA AGATTCTTTA CTACCACGAC CCCATGGTGC CAAGCAGCAA GTTCGACAAG
CCGGCCAAGT CGCCTTTTAT GGACATGATG CTGGTGCCGG TCTATGCGAG TGGCGACGCC
GATCAAGGCA AGGTCACCGT CAGCCCGCGC ATCCAGCAGA ACCTGGGGGT GCGTACCGCG
ACGGTTACCG AGGGCACGCT GTCGCCCCAG GTTTCCGCTG TAGGCAGCAT TGCCTACAAC
GAGCGTGATC AGGCCACCGT CCAGGCCCGC GCCACCGGCT ATGTGGAGCG GCTTCATGTG
CGGGCCACGT TGGACCGGGT GGCGAAGGGT CAGCCGCTGG TAGATCTCTA TGTGCCGGAC
TGGGTGGCTG CCCAGGAAGA GTTTTTGGCC ATCAAACGCA TGCAAGGGAA TGACCTGGCG
TCACTGGTGG ACGGCGCCCG CCAGCGTATG CGACAAGCTG GCATGAGCGA TGAGCAAATT
CGCCAGGTTG AAGCCAGCGG AAGGACGCAG GCTCGTATTA CCGTGACGGC GCCGCTAGGC
GGCGTGGTGG TGGAACTAAT GGCGCGCGAA GGCATGACGG TAATGGCCGG CACCACTCTG
TTTCGCATCA ATGGCCTGTC CACCGTCTGG GCTAACGCCG AGGTGCCTGA GAGCCAGTCG
GCCCTGCTGC GCCCGGGCGC CAAGGTGCAG GCGCGCAGCC CGGCGGCGCC GGGCACCACC
TTCAACGGCA AGGTGCAGGC GATCCTGCCC GAGGTCAACC CGGCCACACG CACGCTCAGG
GCCAGGATGG AACTGGCCAA CCCGGGCGCA CGTCTGGTGC CTGGCATGTT CGTATCCATG
CAGTTCATGG ACATGCGCGC CGAGAAGGCA TTGCTGGTGC CCACCGAAGC CGTCATCCAG
ACGGGCAAGC GTACGGTCGT CATGCTGGCC GAGGAAAACG GACGCTTTCG GCCGGTTGAC
GTGGAAGCCG GGATCGAGGC CGGCGGTCAA ACTGAAATCA AGCGCGGGCT GCAGGCTGGC
CAGCGCGTCG TGGTGTCTTC ACAGTTCCTG ATCGATTCCG AAGCCAGCCT CAAAGGGGTC
GAAGCCCGGC TCAACGAGGC GCCCAAGCCG GTCGCGGGCA ATACCGCGCC GCGGCACGAA
GGAGAGGCGA AGATCGAGGC AGTTGGCAAG GACGCGATCA CTCTGTCGCA TGGGCCAATC
CCCTCACTGA AGTGGGGGGC TATGACCATG GACTTCAAGT CACCGCCCCC ACAAGCGCTA
CCGCGCAACC TGGAGGCCGG CGACCGGGTG AGCTTTGAGT TCTACATGGA TGCGGACGGA
CTGCCCCAGT TGACCCGTGT CTCGCCTCTG GCTTCCGCGC CAGGCTCCAC GCCAGCTTCC
GCAGGGGGCA AGAAGTGA
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| Protein sequence | MNKKYLIAAL LAAGVLGAAG YGLYTLGVKK GGTMPAASAP ANAGSQSAAP AAAPQSVADG
EEATRRHISA GLKAGDTDPI TGSKILYYHD PMVPSSKFDK PAKSPFMDMM LVPVYASGDA
DQGKVTVSPR IQQNLGVRTA TVTEGTLSPQ VSAVGSIAYN ERDQATVQAR ATGYVERLHV
RATLDRVAKG QPLVDLYVPD WVAAQEEFLA IKRMQGNDLA SLVDGARQRM RQAGMSDEQI
RQVEASGRTQ ARITVTAPLG GVVVELMARE GMTVMAGTTL FRINGLSTVW ANAEVPESQS
ALLRPGAKVQ ARSPAAPGTT FNGKVQAILP EVNPATRTLR ARMELANPGA RLVPGMFVSM
QFMDMRAEKA LLVPTEAVIQ TGKRTVVMLA EENGRFRPVD VEAGIEAGGQ TEIKRGLQAG
QRVVVSSQFL IDSEASLKGV EARLNEAPKP VAGNTAPRHE GEAKIEAVGK DAITLSHGPI
PSLKWGAMTM DFKSPPPQAL PRNLEAGDRV SFEFYMDADG LPQLTRVSPL ASAPGSTPAS
AGGKK
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