| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3445 |
|---|
| Symbol | |
|---|
| ID | 4013903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3647410 |
|---|
| End bp | 3648519 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637943108 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_550252 |
|---|
| Protein GI | 91789300 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.153008 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGGC GTTACTTCGC TACATCTATA GTCATTTGTG CATTGCCTTT GGTGTTGGCC
GCTTGCGGCG ACAAGGCGCA ATCTGATCCA CGTACCGAGG CGCCGCTGGT ACGTGTGGCC
ACCATTCAGG GCTCGGTCGC TGCGTCTCGC GCGTTCACCG GGACCGTAGC CGCTCGGGTA
CAAAGCGATC TGGGCTTTCG GGTCTCGGGC AAGGTGCTGG AACGCCTTGT CGATGCGGGG
CAAGCCGTTA AGCGCGGGCA AGCGCTCATG CGCATCGATC CCATCGACCT GAAGCTCGCC
GCTAATGCGC AACTGGAAGC AGTGGCCGCC GCCCGGGCGC GGGCGCAGCA AACGGCGCAG
GACGAAGCCC GCTACCAGGA CCTGCGCGGA ACCGGTGCCA TTTCAGCCTC AGCCTATGAC
CAGGTCAAGG CTGCAGCAGA TGCGGCCAAA GCCCAGCTCA ACGCAACCGA AGCCCAGGCC
GAAGTCGCTC GAAACGCGAG CCGCTATACG GAACTGGTGG CAGATGGCGA TGGCATCGTC
ATGGAAACGC TGGTGGAACC CGGCCAGGTC GTCAACGCGG GACAGGTCGT GGTGCGTCTG
GCCCATGCCG GCCGCCGTGA AGCCGTCATT CAACTACCGG AAACCTTGCG CCCTGCGGTC
GGTTCAACCG GGCTGGCCAC GCTCTTTGGC CAGGAAGGCG TAGCCGTTCC GACCAAACTC
AGGCAGCTCT CGAACGCCGC GGACCGGCTG ACGCGCACTT TCGAAGCGCG CTATGTGCTG
GATGGCGAGC TATCCAACGC CCCATTGGGC AGCACAGTCA CCGTTCAAAT CCCGGACGCA
AATTCCACTA CGCAAGACGG CTTTTCGGTA CCCATTGCTT CCTTGTCCGA CGCGGGCAAA
GGGCCGGGGG TCTGGGTTAT CCAGGGCGAG CCAGCCAAGG TTTCATGGCG GCCAGTAAAG
GTCCAGCGCC TGGGCGACGA CAGTGCTTAC ATTGCGGGTC AGCTCAAGCA GGGTGACCGG
ATCGTCGCAC TCGGCACGCA TCTGCTGCGC GAAGGCGAGC AAATCCGCGT GGCGGCTCAA
GCGCCCGTAA CTGCAAGCGC GCGGCCATGA
|
|---|
| Protein sequence | MLRRYFATSI VICALPLVLA ACGDKAQSDP RTEAPLVRVA TIQGSVAASR AFTGTVAARV
QSDLGFRVSG KVLERLVDAG QAVKRGQALM RIDPIDLKLA ANAQLEAVAA ARARAQQTAQ
DEARYQDLRG TGAISASAYD QVKAAADAAK AQLNATEAQA EVARNASRYT ELVADGDGIV
METLVEPGQV VNAGQVVVRL AHAGRREAVI QLPETLRPAV GSTGLATLFG QEGVAVPTKL
RQLSNAADRL TRTFEARYVL DGELSNAPLG STVTVQIPDA NSTTQDGFSV PIASLSDAGK
GPGVWVIQGE PAKVSWRPVK VQRLGDDSAY IAGQLKQGDR IVALGTHLLR EGEQIRVAAQ
APVTASARP
|
|---|
| |