| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3421 |
|---|
| Symbol | |
|---|
| ID | 4013918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3618476 |
|---|
| End bp | 3619810 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637943084 |
|---|
| Product | D-glucarate dehydratase |
|---|
| Protein accession | YP_550228 |
|---|
| Protein GI | 91789276 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.36134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGACA CCTCCACACC CCTGATCACC GAGCTGCGCG TGATCCCGGT CGCCGGCCGC
GACAGCATGC TGCTCAACCT GAGCGGCGCG CACGGCCCCT TCTTCACACG CAACCTGTTG
ATCCTCACCG ACAATTCCGG GCGCACCGGC GTGGGCGAGG TGCCTGGCGG CGAGAAGATA
CGCCAGACCC TCGAAGACGC GCGCCCGCTG GTGGTGGGCC AGCCGATAGG CGCCCACCAG
CGCGTGCTGC AGCAGATGCA GCAGCAGTTT GCCGACCGCG ACAGCGGCGG ACGTGGACTG
CAAACCTTCG ACTTGCGCAC CACCATCCAC GCGGTGACCG CCGTTGAGTC GGCACTGCTG
GATTTGCTGG GCCAGCACCT GGATGTGCCG GTCGCCGCAT TGCTGGGCGA AGGCCAGCAG
CGCGAGGCGG TCGAGATGCT GGGCTACCTG TTCTTTGTGG GCGACCGCAG CAAGACAGAC
CTGCCCTACA ACAGCGAACC CAATGCCGAC AACGCCTGGT CGCGGATACG CCACGAAGAA
GCACTGACCC CCGAAACCAT CGTGCGGCAG GCCGAAGCGG CGCAGGAGCG CTACGGCTTC
AACGACTTCA AGCTCAAGGG CGGCGTGCTG CGCGGCGAGG AAGAAATCGA GGCCGTGACG
GCGCTGCACG AGCGCTTTCC GAACGCGCGG GTGACGCTGG ACCCGAACGG AGGCTGGCTG
CTCAAGGACG CCATCCGCCT GATGCGCGAC ATGAAAAATG TCGTAGCCTA CGCCGAAGAC
CCGTGCGGCG CCGAAGAAGG CTTCTCGGGC CGCGAGGTCA TGGCCGAGTT CCGCCGCGCC
ACCGGCCTGC CCACCGCCAC CAACATGATC GCCACCGACT GGCGGCAACT GCAACACGCC
CTGTCGCTGC AGTCAGTGGA CATTCCGCTG GCCGACCCGC ATTTCTGGAC CATGGCCGGC
TCGGTACGCG TGGCGCAGAC TTGCCGCGAC TGGGGTCTGA CCTGGGGCTC GCATTCGAAC
AACCACTTCG ACGTGTCGCT CGCCATGTTC ACCCATGTCG GCGCAGCCGC GCCGGGCCGC
GTGACGGCCA TCGACACGCA CTGGATCTGG CAGGACGGCC AGCGCCTCAC CAAGGAGCCG
CTGCAGATCG TGGGCGGGCA GGTAGCTGTG CCGAAGAAGC CCGGCCTCGG TGTCGAACTC
GACATGGCCG AGGTGGAAAA GGCGCACCAG CTCTACAAGC AGCACGGCCT GGGCGCGCGC
GACGACGCTG TCGCCATGCA AAGCCTGATA CCCGGCTGGA AATTCAACCC CAAGCGTCCT
GCTTTCGATC GCTGA
|
|---|
| Protein sequence | MPDTSTPLIT ELRVIPVAGR DSMLLNLSGA HGPFFTRNLL ILTDNSGRTG VGEVPGGEKI
RQTLEDARPL VVGQPIGAHQ RVLQQMQQQF ADRDSGGRGL QTFDLRTTIH AVTAVESALL
DLLGQHLDVP VAALLGEGQQ REAVEMLGYL FFVGDRSKTD LPYNSEPNAD NAWSRIRHEE
ALTPETIVRQ AEAAQERYGF NDFKLKGGVL RGEEEIEAVT ALHERFPNAR VTLDPNGGWL
LKDAIRLMRD MKNVVAYAED PCGAEEGFSG REVMAEFRRA TGLPTATNMI ATDWRQLQHA
LSLQSVDIPL ADPHFWTMAG SVRVAQTCRD WGLTWGSHSN NHFDVSLAMF THVGAAAPGR
VTAIDTHWIW QDGQRLTKEP LQIVGGQVAV PKKPGLGVEL DMAEVEKAHQ LYKQHGLGAR
DDAVAMQSLI PGWKFNPKRP AFDR
|
|---|
| |