| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3417 |
|---|
| Symbol | |
|---|
| ID | 4013914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 3612204 |
|---|
| End bp | 3614699 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637943080 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_550224 |
|---|
| Protein GI | 91789272 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2730] Endoglucanase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCCGG CTTTCCCGCC AGCCCAGGAA AAAACAACCT CCATGCAAAG ACGTGAATTT
TCGCAAGCCG CCGCCGCGGC GGCCACGCTG GCCACCTTTG GCTCCCTTGT GTCGGCCGCG
CGGGCAGCAC CGGCGGGCCC TCTGCCGGAC AAGGGGGCGG CGCAGCCCGA CGGCAGAAAC
ACCGCCCGGG TGGCGATGGG CACCAATCTT TCGGGCATGG AATGGGCCAA GCCCGGGCTG
CGCTATGGAA TGAGCAGTGC GCCCAATCTG CACTTCACCG TCCCGCGCAA GGTCGATGCG
GCCTACCTGG CGGCCTGTGG CTACACGAAG AACCGCCTGC CCATCCAGTG GGAGCTTTTG
CAGCCGATGC TGCACGACAC CCCGGCCAAC GCAGCGGCGA AGGCGGCGAT TGGCAACCCG
GGCGCGTTTC ATCCCGCGTA CGAGGCCTAC ATCACGGGCG TGCTCGATGC CCACGCGGCG
GTCGGCATGA AATGCATCAT TGACAACCAC AACTACGGCC GTTACCAGGA CTTCCGGTTT
CAGCCCGACG GGGCCGTCAT CGGCCTGACC ACGCCGCCCA ATCCCTTGCT GCGACCCTAT
ACCAGCGATC GTACGCAGGT GCAGGTGCGG ATTTTTTCGC TCGCGCCCGG TGCCACGCTG
ACCCAGGCCC ACTTCGTCGA TTTCTGGTCG CGTGCCGCGC GCAGGTGGAA GGACCACCCC
GGCTTTGGCG GGTACGGCCT GATGAACGAG CCTCACGACA TGCCCAAACC CGGTGGCGTG
ATTGCGTCGA ATGAAGAGGC CGTGAAGGCG GCCGAAGACC TCACCATCTG GCCGGCCTAT
GCGCAGGCGG CTATCGATGC GATCCGCGCC ATCGACACGG CCAATCCCAT TTACGTGGCG
GGAAACCAGT ACAGCTCGGC CATGGTCATC GGAACCAAGA ACCCCGGCTT TCCATTGCGT
GGCAGCAACC TGATTTACGA AGTTCACATG TACCTGGATG CGTTCAGCAA TGGCGCTTCG
TTTGACTATG ACGCCGAAGT GGCGAAGAAC TTCAGCGCGG GTTTCGGCGC CGGTGCCATC
CACCCCGGCA CCGGCCTGGA GCGGCTTAAA AAGGCCACCG GCTGGGCCAA GGCCGCGGGT
GTCCGGCTGG CGCTGACCGA GGTCGGGATG CCGATAGACG ACCCGCGCTG GGAGCCGATG
TTCCTGCGCG CTGTCACCCA TGCCTATGAG TCAGGTTGCG AGATATACAG CTGGATGGGG
GGTAATCATT GGCCGATCCG CAACTACGCC ATCAACCATG TGCCGGGCTG GCACCAGAAC
AAGACGCTGG AGCCGCTGGT GTCCGGCGTG CTCAAGGCCT CTGCCGGCAT CGAGCAGGCC
CTGCTCTTCG ACGACGGCCT GGGCTATGCG CTGGCCGGCG CTCCCCTCAC GATCACCGTC
TATGCCCGGG GCAACCTCGG CCGGCCTGTC TCTGTGCTGG TGACGTCGAA AGGGCGGGGG
ACGTTGAGCA AGTCGCGGCT GACCCTGCCG GCCGGGCCGA ACGGCCAGGA CAGCTTCACC
TACACGCCGG CGGACAACGA GGTCGCCACA CTCAGCTACA CGGGCGCCGG CCCATGGACG
GGCCCGCTGC CGCCGCCGCG CAAGGTGTTC TCCCTGGCCG ACCCGGCGGC CTACGCCACG
ACCAGCCTGG CAGACGCGGC AATGACCATC ATTGCCAAAT ACGGTGCCTG CAAGTGGGAG
CTCGCCGACG GGCACACCGA TTACCTGTTG GGGGCACCGG CCGCGGCGGG CCAGGTGGTG
CGCGCCATCT CGGACTCCGG CTATGGCTCC AGCCCGGGCA ATGCCATGGA AATGATCAAC
TGGACCAACA AGGACAGCAG CACCATGGGT GCGATGTCGC TGCCCGTCAT GCGTGTGACG
AATGGCCGGA AGAACTCGGA CCATACGGCG CCCGATACCT TTGGCTTCTG GTGCAAGAAA
TCGGCCCCGG CAGCGGGCGT GCAGCCTCGC CCGAAGAACC GCGTGCCCTA CAACATCGAG
GACGCCCACT TTGCCCTGGC TTGCGTGAGC ATTCCGGGGA CAAGCAACAC CGGTGTGGTG
TTTCAGGCCT CAAAGGCGGA GGCGCGCCAC ACCTCGGAGC TGGGGTTCAC CAACGGCCAG
CCGCGGGCCA GCTGGCTGGA TGCCAAGGGC CAGACGGTGC AACTGGTCAG CGCGAACAGG
TTGCCGGTCA ATACGCCCGC GGTGCTGGCA TTTACGTCCG CACCGGGCGC GCAGAGGCTG
CGTGTCAATG CGCATGAGGT AGCGAGCCAC AACACCACTT TCGCGCCCAG CGTTTATTCC
CAGATGCTGA TCGGCTGGGG CTACCTCGGT TACTACCCGC GTGACGGCTT CAGGGGCCAT
GTGTACGCGG TGATCACCGG AAAGGGTGCA CCCACGGTGG AGGAGATGGT GGTGCTTGAA
CGTTACCTTG GCACCACTGC AGGCCTCAAT ATTTAA
|
|---|
| Protein sequence | MGPAFPPAQE KTTSMQRREF SQAAAAAATL ATFGSLVSAA RAAPAGPLPD KGAAQPDGRN
TARVAMGTNL SGMEWAKPGL RYGMSSAPNL HFTVPRKVDA AYLAACGYTK NRLPIQWELL
QPMLHDTPAN AAAKAAIGNP GAFHPAYEAY ITGVLDAHAA VGMKCIIDNH NYGRYQDFRF
QPDGAVIGLT TPPNPLLRPY TSDRTQVQVR IFSLAPGATL TQAHFVDFWS RAARRWKDHP
GFGGYGLMNE PHDMPKPGGV IASNEEAVKA AEDLTIWPAY AQAAIDAIRA IDTANPIYVA
GNQYSSAMVI GTKNPGFPLR GSNLIYEVHM YLDAFSNGAS FDYDAEVAKN FSAGFGAGAI
HPGTGLERLK KATGWAKAAG VRLALTEVGM PIDDPRWEPM FLRAVTHAYE SGCEIYSWMG
GNHWPIRNYA INHVPGWHQN KTLEPLVSGV LKASAGIEQA LLFDDGLGYA LAGAPLTITV
YARGNLGRPV SVLVTSKGRG TLSKSRLTLP AGPNGQDSFT YTPADNEVAT LSYTGAGPWT
GPLPPPRKVF SLADPAAYAT TSLADAAMTI IAKYGACKWE LADGHTDYLL GAPAAAGQVV
RAISDSGYGS SPGNAMEMIN WTNKDSSTMG AMSLPVMRVT NGRKNSDHTA PDTFGFWCKK
SAPAAGVQPR PKNRVPYNIE DAHFALACVS IPGTSNTGVV FQASKAEARH TSELGFTNGQ
PRASWLDAKG QTVQLVSANR LPVNTPAVLA FTSAPGAQRL RVNAHEVASH NTTFAPSVYS
QMLIGWGYLG YYPRDGFRGH VYAVITGKGA PTVEEMVVLE RYLGTTAGLN I
|
|---|
| |