| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3401 |
|---|
| Symbol | |
|---|
| ID | 4013937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3597760 |
|---|
| End bp | 3598944 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637943064 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_550208 |
|---|
| Protein GI | 91789256 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACGC TGGCGCTGAT GACGGTGGGT GCCAGCGGCA TGTATGTGGT GCCGGTGGTA
CTGCCGGCCG TGCAGGCCGA TTTTGGCGTG GCGCGTGCCG ATGCCTCACT GCCCTACACC
CTGCTGATGA TCGGATTCGG CCTGGGCGGC GTGCTGATGG GGCGGCTGGC CGACCGGTTC
GGCGTGATGG TGCCGCTGCT GATAGGAGCG GTGGGGCTGG GCCTGGGTTA CGCCGCCGCG
GCGATGGCCA GCAACATCTG GATGTTCATG CTGGCGCACG GCTTCCTGGT CGGCCTGCTG
GGCAGCTCGG CCACCTTCGC GCCCCTGCTG GCCGACACGT CCCTGTGGTT TGTGCGGCGG
CGCGGCATTG CGGTGGCGGT GTGCGCCAGC GGCAACTACG TGGGCGGCGC CATCTGGCCG
CCTGTCGTGC AGCATTTTGT GGAAGCCGTG GGCTGGCGCC AGACCTACCT GGGCCTGGGG
CTCTTCAGCG TGGTCACCAT GGCAGGGCTG GCGCTGCTGA TGCGCAAGCG CCCGCCGATG
GCCGTGGCCG CGCCGGTCAA CCGCCACTTT GCGGCCAGTC CCAGCAGCCT GCCCTTTGGC
CTGCCACCGG GCAAGGCCCA GGTGCTGCTG TGCATTGCCG GCGTGTCGTG CTGTGTGGCC
ATGGCCATGC CGCAGGTGCA CATCGTTTCC TACTGCACCG ACCTGGGCTA CGGCGCGGCG
CGGGGCGCCG AGATGCTGTC GCTGATGCTG GCCTGTGGCG TGGTGAGCCG CCTCGTGTCG
GGCCTCATCT GCGACCGCAT CGGCGGCCTG CGCACGCTGC TGCTCGGCTC GGCCCTGCAG
GGCATTGCGC TGCTGATGTT TTTGCCCTTC AACGGACTGG TGTCGCTATA CCTGATTGCC
GCGCTGTTCG GCCTGTTCCA GGGGGGCATC GTGCCGTCCT ACGCCATCAT CGTGCGTGAA
TATTTTTTGC CGGCGGAAGC CGGCGCGCGC GTGGGAACGG TGATCATGGC GACCATGTTC
GGCATGGCGC TGGGCGGCTG GATGTCGGGC AAGGTGTTTG ACCTCACGGG ATCCTACCAG
GCCGCCTTCC TCAATGGCAT CGCGTGGAAC CTGCTGAACC TGGGCATCGC GGTATTTCTG
CTTTGGCGCG TGCGCCCGCC ACGCCGCATC ACACAGCCGG CCTGA
|
|---|
| Protein sequence | MITLALMTVG ASGMYVVPVV LPAVQADFGV ARADASLPYT LLMIGFGLGG VLMGRLADRF
GVMVPLLIGA VGLGLGYAAA AMASNIWMFM LAHGFLVGLL GSSATFAPLL ADTSLWFVRR
RGIAVAVCAS GNYVGGAIWP PVVQHFVEAV GWRQTYLGLG LFSVVTMAGL ALLMRKRPPM
AVAAPVNRHF AASPSSLPFG LPPGKAQVLL CIAGVSCCVA MAMPQVHIVS YCTDLGYGAA
RGAEMLSLML ACGVVSRLVS GLICDRIGGL RTLLLGSALQ GIALLMFLPF NGLVSLYLIA
ALFGLFQGGI VPSYAIIVRE YFLPAEAGAR VGTVIMATMF GMALGGWMSG KVFDLTGSYQ
AAFLNGIAWN LLNLGIAVFL LWRVRPPRRI TQPA
|
|---|
| |