| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3105 |
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| Symbol | |
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| ID | 4014224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 3278000 |
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| End bp | 3279289 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637942772 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_549917 |
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| Protein GI | 91788965 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.257739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGA CCGTACTCGC CCTGAGCTTC ACGCTCTTCC TCGTGATTGG CGTGCCGGTC
GCGTTTGCCA TCGGCCTGTC GTCGGTCGCC ACCATCATCG CCGCCGGTCT GCCGATTGCG
GTGGTGTTCC AGAAAATGGT CGGCGGCATG CAGGTGTTCT CGTTCCTGGC TATTCCGTTT
TTTGTCTTCG CCGGCGAGCT GATGCTCTAC GGCGGCATTG CCGAGCGCAT CGTGCGCTTC
GCCAACAGCC TGGTCGGCCA TGTGCGCGGC GGCCTGGGCA TGAGCAACGT GATCGGCTGC
ACGCTGTTCG GGGGCGTCGC CGGCTCGCCG CTGGCCGATG TGTCAGCCAT GGGCTCGGTG
ATGATTCCGC TGATGAAGAA GGAAGGCTAT GACGCCGACT ACGCGGTCAA CGTCACCACA
CACGCGGCAC TGGTGGGCGC CATCATGCCG ACCTCGCACA ACATGATCAT CTTCACGCTG
GCCACCTCGG GCATCGCCTC GGTCAGTGTG CTGAGCCTGA TCCTCGCGGG CCTGGTTCCG
GCGGTGATCC TGACCCTGTG CAACCTGGGC GCTGCCTACT ACGTGGCCGT CAAGCGCGGC
TACCCGACAC ACGGCGCCTT CCCCGGCTGG GGCGAGGTGT TGCGCGCCTT CGGCGCCGCG
CTGCCCGGCC TGCTGGTGGT GGTGATCATC CTCGCCGGCA TCCTGTCGGG TGCATTCACG
GCCACCGAGT CGGCATCGAT CGCGGTCGCC TGGGCGCTGG CGATCACAGT GCTTGTCTAC
AAGACGCTGA CGTGGAACAA CTTTCTCAAG GCTTGCGCCA AAGCCTGCAA GACCACCGGT
GTGGTCCTGC TGCTGATCGG CATCTCGGCC GCCTTCGGCT ACTTCATGGC GCTGTACGAG
GTGCCGCAAC TGACCGGCGA GCTGATGAAG TCGGTGAGCA GCGAGCCCTG GGTCATCTTC
CTGATGATCA ACGTGCTGCT GTTCATCCTC GGCACCTTTC TCGACATGGC GGCGACCATC
CTGATCTGCA CGCCGATCTT CATGCCGATT GCGATGCAGT TCGGCATGGA CCCGGTGCAG
TTCGGCATCG TGATGCTGAT CAACTGCGCG TTGGGCCTGA ACACGCCGCC GGTCGGGTCG
GTGCAATTCG TCGGCTGCGC CATTGGCGGC ATCTCGGTCG GGCAGGTGAT GCGCTCGATC
GGCCCGTTCT ACGGCGCGCT CGGCGTCTGT CTGCTGCTGG TGACCTACGT GCCGGCCTTC
TCGCTGTGGC TGCCGGCGCT GTACAAGTAA
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| Protein sequence | MELTVLALSF TLFLVIGVPV AFAIGLSSVA TIIAAGLPIA VVFQKMVGGM QVFSFLAIPF
FVFAGELMLY GGIAERIVRF ANSLVGHVRG GLGMSNVIGC TLFGGVAGSP LADVSAMGSV
MIPLMKKEGY DADYAVNVTT HAALVGAIMP TSHNMIIFTL ATSGIASVSV LSLILAGLVP
AVILTLCNLG AAYYVAVKRG YPTHGAFPGW GEVLRAFGAA LPGLLVVVII LAGILSGAFT
ATESASIAVA WALAITVLVY KTLTWNNFLK ACAKACKTTG VVLLLIGISA AFGYFMALYE
VPQLTGELMK SVSSEPWVIF LMINVLLFIL GTFLDMAATI LICTPIFMPI AMQFGMDPVQ
FGIVMLINCA LGLNTPPVGS VQFVGCAIGG ISVGQVMRSI GPFYGALGVC LLLVTYVPAF
SLWLPALYK
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