| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3097 |
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| Symbol | |
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| ID | 4014216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 3267503 |
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| End bp | 3269857 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637942764 |
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| Product | sigma 70 (RpoD) |
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| Protein accession | YP_549909 |
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| Protein GI | 91788957 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.884131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACAG CCAAAACGGC AGCGAAACCC GCTGCCAAAC CGGCCGCAAG GCATGGCCCC
CAGAACGTCA AGGTTGAAAA ACCCGGAAAA CCCGCCATAT CCGTTAAAGC CAGTAGCCCG
AATGCCCCGG TGAGCAAAAA GCCCCTGAAA TCCGCGAAAC CTGATACGTC CCTGAAGAAA
GTCCCTGCCG TGCCGACAAA GTCCAGCCCC GAATCCAAGC CTGTTGCAGC CGTTGCCGAC
GTGCCCGTGA AGAAAAAACC GGGTCGCCCG CCGAAAAACC CTGCAGCAGC CGATAGCGCA
CCTGCAAGCA CCGGCGCCAA GCGCGGCCGC AAGCCCAAGA ACGCGGGCGC AGCCAAGGTC
GGGGAAGACC TCGACCTGTC CGACATTGAA GAGGATCTGG TCGGCGAACC CGTTGCGGAG
ACCACCGAAA AGGTCAAACC GCTGCGCATG AAGATCAGCA AGGCCAAAGA ACGTGCCTTG
ATGAAGGAAT TTGGCCTGGA CGAGACGGTG TTGTCGGAAG AGGACATGCT CAAGCGCCGC
ATGCGCCTGA AAACCCTGAT CAAGCTCGGC AAAACCCGCG GCTACCTCAC GCACGGCGAA
ATTTCCGATC ACCTGCCCGA CAAGCTGGTC GACGCGGAAA CGCTGGAAGT CGTCGTCAAC
ATGCTCAACG ACATGGGCGT GGCCGTGTAC GAGCAGGCGC CGGACGCCGA AACCCTGCTG
CTGAACAACA CCGGGCCGAC CGTGGCCACG GAAGAAGAAG CCGAAGAAGA AGCCGAAGCC
GCCCTGTCCA CCGTGGACAG CGAATTCGGC CGCACGACCG ACCCTGTGCG CATGTACATG
CGTGAAATGG GCACGGTCGA GCTGCTGACC CGCGAAGGCG AAATCGAGAT TGCCAAGCGC
ATCGAGGGCG GCCTCATGAA AATGATGGAA GCCATCTCGG AGAGCCCCGC CACCATCGCA
GAAATCATGC GGCTGGGCGA GGAAATCCGC GAAGGCAAGA TCGTGATCTC GACCGTGGTG
GACGGTTTCT CCAACCCCAA CGAAGCCGAT GACTATGTGG CCGAAGAGGA CTTTGACGAG
TTCGACGAGG AAGACGACGA CGATGGCAAG GGCGGCTCCA AGGCCCTGAC CAAGAAACTC
GAAGAGCTCA AAAAAGAAGC CCTCAGCCGC TTTGACAAAA TTGCCAGCCT GTTCGAGAAG
GTGCACAAGA CCTACGACAA GGAAGGCTAT GGCACCCCGA CTTATGTGAA GGCGCAAAAG
GCCTTGAGCG ACGAGCTCAT GACCGTGCGC TTTACCGCCA AGACCATTGA AAAGCTCTGC
GACATGCTGC GCGGCCAGGT GCTGGACGTG CGCAAGAAAG AGCGCGAGCT GCGCCGCATC
ATCGTCGAGA AGTGCGGTAT GCCCCAGGAA ACCTTCATCA AGGATTTCCC GCCCAATCTG
CTCAACCTCA AGTGGGTTGA AAAACAGGTC GCGTCGGGCA AGCCCTGGTC CACCGTGATG
GCGCGAAATA TTCCGCCGAT TCAGGAACTG CAGACCAAGC TGGCCGAATT GCAGGCCCGC
GTGGTGGTGC CGCTGGGTCA GCTCAAGGAC ATCAACAAGC GCATGAACGA AGGCGAGTCC
AACTCGCGCG ATGCCAAGAA AGAGATGATC GAGGCCAATT TGCGCCTGGT GATCTCGATT
GCCAAAAAAT ACACCAACCG CGGCCTGCAG TTCCTGGACC TGATCCAGGA AGGCAACATC
GGTTTGATGA AAGCCGTCGA CAAGTTCGAA TACCGCCGCG GCTACAAATT CTCGACCTAT
GCCACCTGGT GGATTCGCCA GGCGATCACG CGCTCCATCG CGGACCAGGC CCGTACCATC
CGCATCCCGG TCCACATGAT CGAGACCATC AACAAGATGA ACCGCCTGTC GCGCCAGCAT
CTGCAGGAAT TCGGCTTTGA GCCCGACGCC AGCATCCTGG CCGCCAAGAT GGAGATTCCT
GAAGACAAGA TCCGCAAGAT CATGAAGATC GCCAAGGAGC CGATCTCGAT GGAAACGCCG
ATCGGTGACG ATGATGATTC GCACCTCGGC GACTTCATCG AAGACAGCGC CAACACCGCA
CCGCTGGAGG CCGCAATGCA GGCCGGCCTG CGCGATGTGG TGAAAGACAT CCTCGACAGC
CTGACACCGC GCGAAGCCAA GGTGCTGCGC ATGCGTTTCG GCATCGAGAT GTCGACCGAC
CACACGCTGG AAGAAGTTGG CAAGCAGTTT GACGTGACGC GCGAGCGCAT CCGCCAGATC
GAAGCCAAGG CGCTGCGCAA GCTCAAGCAC CCGAGCCGCA GCGACAAGCT GCGCAGCTTT
ATCGATACGC TGTAA
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| Protein sequence | MPTAKTAAKP AAKPAARHGP QNVKVEKPGK PAISVKASSP NAPVSKKPLK SAKPDTSLKK
VPAVPTKSSP ESKPVAAVAD VPVKKKPGRP PKNPAAADSA PASTGAKRGR KPKNAGAAKV
GEDLDLSDIE EDLVGEPVAE TTEKVKPLRM KISKAKERAL MKEFGLDETV LSEEDMLKRR
MRLKTLIKLG KTRGYLTHGE ISDHLPDKLV DAETLEVVVN MLNDMGVAVY EQAPDAETLL
LNNTGPTVAT EEEAEEEAEA ALSTVDSEFG RTTDPVRMYM REMGTVELLT REGEIEIAKR
IEGGLMKMME AISESPATIA EIMRLGEEIR EGKIVISTVV DGFSNPNEAD DYVAEEDFDE
FDEEDDDDGK GGSKALTKKL EELKKEALSR FDKIASLFEK VHKTYDKEGY GTPTYVKAQK
ALSDELMTVR FTAKTIEKLC DMLRGQVLDV RKKERELRRI IVEKCGMPQE TFIKDFPPNL
LNLKWVEKQV ASGKPWSTVM ARNIPPIQEL QTKLAELQAR VVVPLGQLKD INKRMNEGES
NSRDAKKEMI EANLRLVISI AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE YRRGYKFSTY
ATWWIRQAIT RSIADQARTI RIPVHMIETI NKMNRLSRQH LQEFGFEPDA SILAAKMEIP
EDKIRKIMKI AKEPISMETP IGDDDDSHLG DFIEDSANTA PLEAAMQAGL RDVVKDILDS
LTPREAKVLR MRFGIEMSTD HTLEEVGKQF DVTRERIRQI EAKALRKLKH PSRSDKLRSF
IDTL
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