| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3057 |
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| Symbol | rumA |
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| ID | 4014287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 3221858 |
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| End bp | 3223318 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637942722 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_549869 |
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| Protein GI | 91788917 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATG AAAAACTGAA TGACCACACT GTGAAAGCGC CTGAATACCT GCCAGACATC
CTCACGGTAG AGTCCCTGGA CATGGAAGCG CAGGGCATTG CCCACCGGGC AGACGGTAAG
GTTGTGTTCA TAGAGGGTGC GCTGCCTTTT GAACGGGTGA CCGCCAATGT GTATCGCAAG
AAGAGCAGCT TTGAAAAAGC GGTGGTGATG GCTATTCATC GCGAGTCTTC GCAGCGCGTG
CGCCCGGCTT GCCCGCATTT TGGCCTGCAT ACCGGCGCGT GCGGCGGCTG CAAGATGCAG
CACCTTCATG TGGGTGCGCA GGTGGCTGTC AAGCAGCGGG TGCTGGAAGA CAACCTCTGG
CACATCGGCA AGGTCAAGGC CGACAACCTG CTCAGGCCCA TTGAGGGGCC CGCCTGGGGG
TATCGCTACC GGGCGCGCCT GTCGGTGCGC TATGTGCGCA AGAAGAATGC GGTGCTGGTG
GGCTTTCATG AACGCAAGAG CAGTTATGTG GCCGACATGA CTGAGTGCCA TGTCGTGCCC
CGGCATGTCA GCGACATGCT GGTGCCGCTG CGTGAACTGA TTGCCGGCAT GGATGCCAGG
GAAACCCTGC CGCAAATCGA GTTGGCCTGC GGCGATACCG TCACGGCCAT GGTGCTACGC
CACATGGAGC CGCTCAGCAG CGGCGATCTG GCACGCTTGC GCGCTTTCGC GGTATCGCAT
CCAGGCCTGC AGTGGTGGCT GCAGCCAGGT GGCCTGGACA GCGTGAAGCT GCTCGACGAG
GGCGTACCCG AGTTGAGCTA CGACCTGCCC GAGTTTGGCA TCACGATGCC CTTCAAGCCG
ACCGATTTCA CGCAGGTGAA CCCGCACATC AACCAGGTGC TGGTGTCGCG GGCGTTGCGC
CTGCTGGCCG TGCAGCCGCA TGAGCGTGTG ATTGACTGGT TTTGCGGCCT GGGGAATTTC
ACACTGCCGC TGGCGACTTG CGCACGCGAA GTGCTGGGTA TTGAAGGCAG CGAGGCCCTG
GTGGCACGCT CCTGCCAGAA CTTCAAGAAG AATCAGCCGG CTTCGCAATC AAGAAGCGCG
CTGTCTGCTA CTGAATTCGT GGCAAGAAAC CTCTTTGAAA TGACACCCGC GATGCTGGTG
AAAGATGGTA TGGCCGACAA GTGGCTGGTG GATCCGCCGC GCGAGGGGGC ATTCGAGCTG
TTCAAGTCGC TGGCGGCGCT GCATCAGCAA ATGGTGACGG GCGTGCCCTG CGACGACGGG
GAACAACAGC AAAGCCTGGT GCTGGGCGAC TGGACGCCGC CCCAGCGCAT TGTTTACGTG
AGCTGCAACC CGGCGACCCT GGCGCGCGAT GCTGGCGTAT TAGTGGAGAG CGGCGCTTAC
CGCTGCACGC TGGCTGGTGT GGTGAACATG TTTCCCCATA CGGCGCATGT GGAGAGCATC
GCGGTGTTTG AGCGGGGTTG A
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| Protein sequence | MTDEKLNDHT VKAPEYLPDI LTVESLDMEA QGIAHRADGK VVFIEGALPF ERVTANVYRK
KSSFEKAVVM AIHRESSQRV RPACPHFGLH TGACGGCKMQ HLHVGAQVAV KQRVLEDNLW
HIGKVKADNL LRPIEGPAWG YRYRARLSVR YVRKKNAVLV GFHERKSSYV ADMTECHVVP
RHVSDMLVPL RELIAGMDAR ETLPQIELAC GDTVTAMVLR HMEPLSSGDL ARLRAFAVSH
PGLQWWLQPG GLDSVKLLDE GVPELSYDLP EFGITMPFKP TDFTQVNPHI NQVLVSRALR
LLAVQPHERV IDWFCGLGNF TLPLATCARE VLGIEGSEAL VARSCQNFKK NQPASQSRSA
LSATEFVARN LFEMTPAMLV KDGMADKWLV DPPREGAFEL FKSLAALHQQ MVTGVPCDDG
EQQQSLVLGD WTPPQRIVYV SCNPATLARD AGVLVESGAY RCTLAGVVNM FPHTAHVESI
AVFERG
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