| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3039 |
|---|
| Symbol | |
|---|
| ID | 4014308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 3203172 |
|---|
| End bp | 3205283 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637942704 |
|---|
| Product | Na+/solute symporter |
|---|
| Protein accession | YP_549851 |
|---|
| Protein GI | 91788899 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGAT TTTTCGGGTC CCGTGAAGGG GAGCGACTCT CAAAGCAGCA GTTCAAGGCC
CAGCTGAACC AGGTTTACTG CTGGTACACG GTGGGCCTGG TGCTGTTTGT GGCGGTGCTC
GCCGGCCTGG AGCGCCTGGG AATGCCCCGG TTGTGGATAG GCTCCACCTT TCTGATGGCC
ACCATTGGCC TGTATGCGGG TATCGGGATC ATGAGCCGTA CCACTGACGC GGCCGAATAT
TACGTGGCGG GCCGCCGCGT CCCGGCGGTC TACAACGGCA TGGCTACCGG GGCTGACTGG
ATGTCGGCGG CATCTTTTAT CGGCCTGGCG GGAACGCTGT ACCTCACGGG TTACAGCGGT
TTGGCTTTCA TCATGGGCTG GACGGGCGGC TATTGCCTGG TCGCGCTGGT GCTGGCGCCT
TACCTTCGCA AGTTTGGCCA GTTCACCATC CCGGATTTCC TGGGCGAGCG CTACGGTGGA
AGCCTGCCCA GGTTCATCGG GGTGATAGCC GCCATCCTGT GTTCCTTTAC TTACCTGGTG
GCCCAGATTT ATGGTGTCGG CCTGATCACG TCCTATCTCA CGGGTATCGC GTTCGAGCTC
GGGATTTTCC TCGGGCTGGG CGGTATTTTG GTGTGCTCAT TCCTGGGTGG AATGCGCGCC
GTGACCTGGA CCCAGGTGGC CCAATACATC ATTTTGGTCG TGGCTTACCT GATTCCGGTG
ATCTGGCTGT CGGCCAAGCA AACCGGCGTA CCGGTGCCGC AACTGGTTTA CGGCTATCAG
CTGGAAAAGG TCACCGCCAA GGAAAAGCAG CTGGCCAATG ATCCTGGGGA ACAGCAGGTG
CGGGCGCTCT TCCGGCAGCG ATCGGAGGCG CTGGCCAACA AGATCGAGGA TCCCGCGGCG
TCATTGACCG CCGACCGGCT GGATGCCAGC CGGAAGATGG AGGAATTGAA GAGTGGTAAC
GCCTCCGTTG CGCAGGTGTC TGCAGCGGCG AGGGCGCTGG CGGCAATGCC CAGGAACGAG
GCGGCCGCGG TCCGCAGCTG GTCGGCCGCC AAAGCCACTG CGGACATCAA GAGCCAGCCG
CTCAACGGCA TGCCGCCCCA CGCGGCCCAG TTTTCCGGTG ACCCGGACGG CACGCCAAAA
GAAAAAGTGC TTTACGACAC GTCGCGCCGG AATTTCCTGG CGCTGGTCTT TTGTCTCATG
GTGGGTACGG CCGCCTTGCC GCACATCCTG ATGCGCTACT ACACCGTCCC CAGCGTGCGG
GAGGCGCGCC AGTCGGTCAC CTGGTCGCTG TTTTTTATCT GCCTGCTGTA CTTCACGGCG
CCGGCCCTGG CCGTGCTGGT GAAATATGAA ATTTTCACCG TGCTGGTGGG CATGCCGTTT
GACCATCTGC CTGCCTGGGT CAACACCTGG AGCAGGGTGG ACCCATCGCT GCTGTCGGTC
ACCGATGTCA ACAAGGACAA CATCCTGCAA CTCAATGAAA TGACGGTAGG CGGCGACGTC
ATCGTGCTGC TCACTCCTGA GCTTGCAGGG CTGCCTTACG TTATTTCAGC GCTGGTGGCG
GCCGGTGGTC TGGCGGCCGC GCTCTCCACC GCAGACGGGC TGCTGCTGAC GATTGCCAAT
GCGCTGGGGC ATGACCTGTA TTACAAGATG ATCGACCCCA ACGCCTCGAC GGTCAGCCGG
GTGACGGTGT CCAAGATTCT GCTGCTCGTC GTGGCCCTGA CGGCGGCCTA TGTGGCGGCG
CAAAAACCGG CCGACATCCT GTTTCTTGTG TCGGCGGCTT TTTCCTTTGC GGCGGCCTCG
TTTTTCCCGG CGCTGAGCCT GGGCATTTTC TGGAAACGCG CGACCGGTAT TGCGGCGGTG
CTGGGCATGA TGGCGGGCCT GGGCGTGACT TCCTTCTACA TGCTGACCAC CCAGCCGTGG
CTGCGGGAGG CCTTCGGCGT CACCTCGCCC ATCCAGCTCT GGTGGGGGAT CGAGCCCATT
TCTGCAGGGC TGTTTGGCGT CCCGGTCGGG TTTGCCGTGA TCGTGCTGGT CAGCCTGGTG
ACCCGTCCCC CTCCCCAGAA AGCCTGCGAT CTGGTGGACC ATGTGCGTTA TCCGGACCTG
AAAAGCCTTT AA
|
|---|
| Protein sequence | MAGFFGSREG ERLSKQQFKA QLNQVYCWYT VGLVLFVAVL AGLERLGMPR LWIGSTFLMA
TIGLYAGIGI MSRTTDAAEY YVAGRRVPAV YNGMATGADW MSAASFIGLA GTLYLTGYSG
LAFIMGWTGG YCLVALVLAP YLRKFGQFTI PDFLGERYGG SLPRFIGVIA AILCSFTYLV
AQIYGVGLIT SYLTGIAFEL GIFLGLGGIL VCSFLGGMRA VTWTQVAQYI ILVVAYLIPV
IWLSAKQTGV PVPQLVYGYQ LEKVTAKEKQ LANDPGEQQV RALFRQRSEA LANKIEDPAA
SLTADRLDAS RKMEELKSGN ASVAQVSAAA RALAAMPRNE AAAVRSWSAA KATADIKSQP
LNGMPPHAAQ FSGDPDGTPK EKVLYDTSRR NFLALVFCLM VGTAALPHIL MRYYTVPSVR
EARQSVTWSL FFICLLYFTA PALAVLVKYE IFTVLVGMPF DHLPAWVNTW SRVDPSLLSV
TDVNKDNILQ LNEMTVGGDV IVLLTPELAG LPYVISALVA AGGLAAALST ADGLLLTIAN
ALGHDLYYKM IDPNASTVSR VTVSKILLLV VALTAAYVAA QKPADILFLV SAAFSFAAAS
FFPALSLGIF WKRATGIAAV LGMMAGLGVT SFYMLTTQPW LREAFGVTSP IQLWWGIEPI
SAGLFGVPVG FAVIVLVSLV TRPPPQKACD LVDHVRYPDL KSL
|
|---|
| |