| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3003 |
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| Symbol | ligD |
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| ID | 4014350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 3164060 |
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| End bp | 3166708 |
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| Gene Length | 2649 bp |
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| Protein Length | 882 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637942668 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_549815 |
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| Protein GI | 91788863 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0636525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.554248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTTCCG CGGATTTGCT GAAAACCTAC CGCGCCAGGC GCGACTTCAA GCAGACGCCC
GAGCCCGCCA CGGGAGGCGA GCGCTCCGGC AAGGCGTTGA GGTTTGTGGT CCAGAAGCAT
GCGGCGCGCA GCCTGCACTA CGACTTCCGG CTGGAACTGC AGGGCACGCT GAAAAGCTGG
GCGGTTCCCA AGGGGCCGAG CCTGGATCCG GCCGTCAAAC GCATGGCCGT GCATGTCGAA
GACCACCCGA TGGCCTATGC AGGCTTTGAA GGCACCATTC CACCCGGGCA GTACGGTGCC
GGCCACGTCA TTGTGTGGGA CCGCGGGCTC TGGACGCCGG TGGGCAACCC GGCCGCAGGC
CTGAAGAACG GCAAGCTCAA ATTTGAACTG CATGGTGAAA AGCTCAAGGG AGGCTGGACG
CTGGTGCGCA TGCACGGCCA TGCCGGGGAA AGCCATGAAC CCTGGCTGCT GATCAAGGAG
CAGGACGACC ACGCACGCCC CGAGCAGGTA TTTGATGTAC TCCAGGCGCT GCCCAACAGC
GTGCTTTCCG GCAAGCCCTT GCCTGGCAAG GCAGCCACCG GCACACAGTG CGCCCCTCGC
GCTGCGCGCA CCAGAAAAGC AGCGCCTGAA AGCCACGCCG GGAAGCACGC CAGAACAACG
GCGGCCAGCG CACGGTCCGG TAAAAGCATT CCCAAAGGCA TTCCCGAAGG CGCGGTGAAA
TCCAGGCTGC CCGGCACGCT GGCCCCGGAA CTGGCCACGC TGGTCAACCG CGTGCCTGCC
GACCCGCAAG ACTGGATCTA CGAAATCAAG TTTGATGGCT ACCGGCTGCT CACCCGCACC
GAGGGAGACT CGGTGCGCTG CATCACGCGC AACGGCAACG ACTGGACCGC CAGGCTGCCT
GGGCTGGCCA AAGCCGTTGC ACAACTGGAT ATACGCTCCG CCTGGCTGGA CGGCGAAATC
GTGGTGATGA ATGACCAGGG CGTGCCCAGC TTCGGCGCGC TGCAAAACGC CTTTGACAGC
GCCAGCACGG CCGACATCCG CTACTACGTG TTCGACCTGC CGTTTTACGA TGGGCTGGAC
CTGCGCCAGG TGCCGCTGGC GCAGCGGCGT GAAATCCTGC GCACGGCCCT GACGCGCAAT
CCGCAGGACA GCATCCGTTT CAGCGAGGCG TTTGACCAGC CCCCGCAAGA CCTGATCGAC
TCGGCCCAGC GCCTGGGCCT GGAAGGCGTG ATCGGCAAGC GCGCAGCCTC GCCCTACGTC
TCGCGCCGCT CGCCCGACTG GATCAAGCTC AAAACCCGGC TGCGCCAGGA GTTTGTGATT
GGCGGCTACA CCGAGCCCAA AGGCTCCCGC ACCGGCCTGG GAGCCCTGCT GCTGGGTGTG
CATGATGCGC AGGGCAGGCT CCGGTACGCC GGCAACGTGG GCACAGGCTT CAATGCCGAG
ACACTGCGCA GCCTCAAGGA GCGGCTGTCA ACGCTGCACA GCGAGCGCAG CCCGTTTGCC
GCGCTGCCGA CAGGCGTCAA AGGGCAATGG GTGAAGCCGC AACTGCTGGC CGAAGTGGCG
TTTGGCGAAT GGACCCACGG CGGCCACATT CGACACCCCG TGTTCCAGGG ACTTCGCACC
GACAAACCGG CCAGAAACAT CCTCCGTGAG ACGCCCACAT CACCAGTCAC CCCCCGGAAA
GGCTCCGACA TGCCGCAAGA CGCTGCCACA CCAGGCCCCA CCAGCCGCAA AACCCGTGAC
AAGGCCCCTG GCAAGGCTCC TGAGTCCGTG CGCATCACGC ATCCCGACCG CGTGATTGAC
AAGACCACCG GCTTCACCAA GCAAGCCATG GTGGAGCACT ACGCCGCCGT CGCCCCGCTC
ATGCTGCCGC ACCTCAAGGG GCGCCCGGTT GCCCTGGTCC GCGCGCCGGC AGGCGTCGGG
GGTGAGCTGT TTTTCCAGAA ACACGCGCAA GCCACGGCGA TTCCCGGCAT CAAGCTGCTC
GACCCGGCGC TGGACCCGGG ACATGAGCCG CTGCTCGAGA TCCCTTCTGC AGCGGCCCTG
CTGGAAGCCG CGCAAGTCAA TGTCGTGGAA TTCCACACCT GGAACGCGAC CAGCCGCGCC
ATTCGCAAGC CTGACCGCAT GACCTTCGAC CTGGACCCCG GCGAAAAGGT TGGCTGGCCG
GAGATGCAGG AGGCCGCGCA GCTGGTGCAC TCTCTTCTGG ATGAGCTGGG ACTGGCCAGT
TTTCTGAAAA CCAGCGGAGG CAAGGGCCTG CACGTCGTGG TGCCGCTGAG GCGCAGCCAC
GACTTCGACA CGGTGAAGGA TTTCTCGCAC GCCATTGTGA AGCACTTGGC AGGTGTCTTG
CCGCAACGCT TCGTGGCGAA GAGCGGCCCC AAAAACCGGG TCGGCAGGAT ATTTGTGGAC
TACCTGCGCA ACGGTTTCGG CGCCACGACC GTCTCGGCCT GGTCGGCGCG CGCGCGGCCA
GGGCTGGGGG TCTCGGTACC GGTGGCGTGG GATGAACTGG CTTCCCTGAC CGGAGGTGCG
CACTGGACCG CGACGACGAT AGGCGGGCGG CTGGCGACTG GAAACCAGCC CTGGAAGGAC
TATGGCGCCC GCGCCAATGG CCTGGCGGAG GCGATGAAAA AGCTGGGCTT CAAGCCGCCC
GCCCATTGA
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| Protein sequence | MGSADLLKTY RARRDFKQTP EPATGGERSG KALRFVVQKH AARSLHYDFR LELQGTLKSW
AVPKGPSLDP AVKRMAVHVE DHPMAYAGFE GTIPPGQYGA GHVIVWDRGL WTPVGNPAAG
LKNGKLKFEL HGEKLKGGWT LVRMHGHAGE SHEPWLLIKE QDDHARPEQV FDVLQALPNS
VLSGKPLPGK AATGTQCAPR AARTRKAAPE SHAGKHARTT AASARSGKSI PKGIPEGAVK
SRLPGTLAPE LATLVNRVPA DPQDWIYEIK FDGYRLLTRT EGDSVRCITR NGNDWTARLP
GLAKAVAQLD IRSAWLDGEI VVMNDQGVPS FGALQNAFDS ASTADIRYYV FDLPFYDGLD
LRQVPLAQRR EILRTALTRN PQDSIRFSEA FDQPPQDLID SAQRLGLEGV IGKRAASPYV
SRRSPDWIKL KTRLRQEFVI GGYTEPKGSR TGLGALLLGV HDAQGRLRYA GNVGTGFNAE
TLRSLKERLS TLHSERSPFA ALPTGVKGQW VKPQLLAEVA FGEWTHGGHI RHPVFQGLRT
DKPARNILRE TPTSPVTPRK GSDMPQDAAT PGPTSRKTRD KAPGKAPESV RITHPDRVID
KTTGFTKQAM VEHYAAVAPL MLPHLKGRPV ALVRAPAGVG GELFFQKHAQ ATAIPGIKLL
DPALDPGHEP LLEIPSAAAL LEAAQVNVVE FHTWNATSRA IRKPDRMTFD LDPGEKVGWP
EMQEAAQLVH SLLDELGLAS FLKTSGGKGL HVVVPLRRSH DFDTVKDFSH AIVKHLAGVL
PQRFVAKSGP KNRVGRIFVD YLRNGFGATT VSAWSARARP GLGVSVPVAW DELASLTGGA
HWTATTIGGR LATGNQPWKD YGARANGLAE AMKKLGFKPP AH
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