| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2822 |
|---|
| Symbol | |
|---|
| ID | 4014511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 2966945 |
|---|
| End bp | 2968615 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637942486 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_549636 |
|---|
| Protein GI | 91788684 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.786314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.174429 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACATGC CATTTTTCGG CCTGACACAG GCGCCGTTTT CGCTCGCTCC GGACCCGCGT
CTGCTGTTTA TGAGCGACCG GCATCGCGAA GCGCTGGCGC ACCTGCTGTA CGGGCTGGGT
GGCGGAGGTG GCTTTGTGCT GCTGACCGGC GAGATCGGCA CTGGCAAGAC CACGGTGTGC
CGCTGCTTTC TGGAGCAGAT TCCGGCCCAC TGCAACGTCG CCTACATCTT CAATCCCAAG
CTCACGGTAA CCGAGCTGCT GCAGTCGATC TGCGACGAGT TCCATGTCAC GGTGCCGCAA
AAAGAGCTGC TGCCGCTCAC GGTCAAGGAT TACCTCGATC CGCTCAACAC CTTCCTGCTG
CAGGCCCATG CCGCCGGGCA GAACAACGTG CTGATCATTG ACGAGGCGCA GAACCTGTCT
GCCGAGGTGC TGGAGCAGCT GCGCCTGCTC ACCAACCTGG AAACCAGCGA GCGCAAGCTG
CTGCAGATCG TCCTGATCGG CCAGCCCGAG CTGCGCACCA TGCTGCAGCG GCCCGAACTG
GAGCAACTGG CTCAGCGCGT GATCGCACGC TTTCACCTCG ACGCACTCAC CGAGGCCGAG
ACGGCGCAGT ACATCCTGCA TCGCCTTGAA GTGTCCGGCC TGAATCGCGC GCTGCCGTTC
GATCGCAAGG CCCTCAAACG CATCCACCAG CGCGCGCGCG GCGTGCCCCG CCGCATCAAC
CTGTTGTGCG ACCGTGCTTT GCTGGGAGCC TTTGCGGGCG GCCAGGCCAC GGTCAACCGC
GGCATCGTCA ACAAGGCGGC GGACGAGGTG TTTGACCCGC CGGTGCGCGC ATCATCTTTA
ACATGGCGCT GGCAGCGCAG CCTTGCCCTG GTGGGCTTGA GTGTCGCCGC CGGCGCCGGG
CTGCTCGCCA CGGCCCGCCT TGCGACGCAG ACGCCGCAAG CGCCGCATGC ACCCGAGATC
GCAGCAGTTG CCACGCCAAC TGACGCAGCC GCACCCGCAG CGGTTGCGGC CTCCGGACCG
GTGATGGCCG CTGCGGCAGC CGACGCAACC CTCGCCCCGC CCACGCCACC CGCGCCGCCC
GCGCAGCCCC CCATCTTGCT GCGCGACGAA GGCCAGGCCT GGCGCGAACT GGCGCAGGCC
TGGAAACTGA CCCCCGGGGA GGGCGACCCC TGCCAGGCGC TGCAGCGCGA GCAGGTGCGG
TGCTTCAGCA GCAACACCAG CCTGGCCCTG ATCCGCCAGC TGGGCCGCCC CGGCATCGTC
AAGCTCGACA GCCAAAGCGG CTCGCCTTCT TATGCCTTGC TCACCGCCCT GACAGACGAC
AGCGCCACCT TGCGCGCCGG GGGCATCGAG CAGACCGTCA CACTGGCCGC GCTGGCCGCG
CGCTGGCAAG GCGACTTTTC CACGCTCTGG CGTTCACCCG CCGGTTATGG AGGCCGCCCC
CTTGATAGCC AGAGCGGCCC GGTGGTCGAA TGGGTTGCGG CCCGGTTGAC CGCAGTGGAT
GGCACGGCGC AGGCGGGCCG GCCCGTGCTG GATGCCTCGC TCAGAGCCCG CCTGCGCACT
TTTCAATTGG CCCAGGGCCT GCCCACCGAC GGCCGACTCG GGCCGTTAAC TTTTATGCAG
CTCAATCGCA CGGCCGGCGT GGACGAGCCG CGCCTTCGAA CCGGGCCCTG A
|
|---|
| Protein sequence | MYMPFFGLTQ APFSLAPDPR LLFMSDRHRE ALAHLLYGLG GGGGFVLLTG EIGTGKTTVC
RCFLEQIPAH CNVAYIFNPK LTVTELLQSI CDEFHVTVPQ KELLPLTVKD YLDPLNTFLL
QAHAAGQNNV LIIDEAQNLS AEVLEQLRLL TNLETSERKL LQIVLIGQPE LRTMLQRPEL
EQLAQRVIAR FHLDALTEAE TAQYILHRLE VSGLNRALPF DRKALKRIHQ RARGVPRRIN
LLCDRALLGA FAGGQATVNR GIVNKAADEV FDPPVRASSL TWRWQRSLAL VGLSVAAGAG
LLATARLATQ TPQAPHAPEI AAVATPTDAA APAAVAASGP VMAAAAADAT LAPPTPPAPP
AQPPILLRDE GQAWRELAQA WKLTPGEGDP CQALQREQVR CFSSNTSLAL IRQLGRPGIV
KLDSQSGSPS YALLTALTDD SATLRAGGIE QTVTLAALAA RWQGDFSTLW RSPAGYGGRP
LDSQSGPVVE WVAARLTAVD GTAQAGRPVL DASLRARLRT FQLAQGLPTD GRLGPLTFMQ
LNRTAGVDEP RLRTGP
|
|---|
| |