| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2804 |
|---|
| Symbol | |
|---|
| ID | 4014532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2946008 |
|---|
| End bp | 2947708 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637942468 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_549618 |
|---|
| Protein GI | 91788666 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.235735 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.384122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATC CCATCATCCC TATTGCCGTC GTGCAAGCCG CTTCCAAAGA GCGAAAACGC
CAGGCACCCA AGGGACGCCG CGTGGAGCCG AGCGCGCTGG CCGACGTGCA ACGCCTGCTG
GGCTCCGAGT CGCGTCAGGC CGATCTGCTC ATAGAGCACC TGCACAAGAT CCAGGATCAC
TTTGGCCACC TGTCGGCAGC CCACCTGGCG GCGCTGGCGC AAGAGATGCG CCTGGCGCAA
ACCGAGGTGT ATGAGGTCGC AACTTTTTAC CATCATTTCG ACGTGGTCAA GGAAGGCGAA
GCCGCGCCGG CGCCCCTCAC CGTGCGTGTG TGCGATGGTC TGTCCTGCGA GATGGCGGGC
GCACGTGATT TACTGGACCG GCTCCCGGCC CTACTGGGCC GCGAGGTACG CGTGATCGCG
GCACCTTGCA TCGGCCGCTG CGAGCAGGCG CCTGCCGCGG TGGTTGGCCA AAACCCCGTA
CCGAACGCCA CCGCAGAGGC CGTCGTGGCC ACCGTGGCAG CGAGGGCTGT ACAGCACGCC
CCCGAAGGCT TTTTCGACTT TTCCAGCTAC CGGGCCGCCG GCGGTTATGC GCTGCTCGCG
CAATGCGTCT CGGGAGACCG CGACGTCGAA TCAGTCCTCA AGACCATGGA AGATTCGGGC
CTGCGCGGCC TGGGTGGTGC CGGTTTTCCG GCCGGCCGCA AGTGGCGCAT CGTCCGCGCC
GAAGCCGGCC CGCGCCTGAT GGCGGTCAAC ATCGACGAGG GCGAACCGGG TACCTTCAAG
GACCGTGTCT ACCTCGAACG CGACCCGCAC CGCTTCCTTG AAGGCATGCT GATCGCCGCC
TGGGCGGTGG GTATCGAGAA GATCTACATC TACCTGCGCG ACGAATACCA TGGCTGCCGC
GCCATGCTCG AAACCGAGCT GGACAAACTC AGGCTGGCAC CGCCGATGGC CGGCATGCCG
CAAATCGAGT TGCGCCGTGG CGCCGGCGCC TACATCTGCG GCGAAGAGTC GGCCATGATC
GAATCGATCG AAGGCAAGCG CGGCATGCCG CGGCTGCGCC CACCCTATGT GGCGCAAGTG
GGCCTGTTCG GCCGCCCGAC GCTGGAACAC AACTTCGAGA CCCTGTTCTG GGTCCGCGAG
ATCCTGGAAA AAGGCGGCGC CTGGTTTACC TCGCACGGCC GCAATGGGCG CAAGGGACTG
CGCTCGTTCT CGGTCTCGGG TCGCGTGAAG AGCCCGGGGG TCAAACTGGC GCCGGCGGGC
ATCACCATCC AGGAACTGAT CGACGAACAC TGCGGCGGAA TGCAGGACGG GCACACCTTC
TACGCCTACC TGCCGGGCGG CGCCTCGGGC GGCATCCTGC CGGCCACCAT GAACAGCATC
CCGCTGGATT TCGACACACT GCAGCCCTAC GGCTGCTTCA TCGGGTCGGC CGCCGTGATC
GTGCTGTCCG ACCAGGACAC CGCCACCAAT GCGGCGCGCA ACATGATGCG CTTCTTCCAC
CACGAGTCCT GCGGCCAGTG CACGCCCTGC CGCGTCGGCA CGGCCAAGGC CGCGCACCTG
ATGGAAAAGC CCAAATGGGA CCTCGCACTG CTGGCAGACC TGTCGCTGGT CATGCGCGAC
GCATCGATCT GCGGGCTGGG CCAAGCGGCG CCCAACCCGA TGGACTGCGT CGTCAAATAT
TTTCCGCACG AGCTGGCCTG A
|
|---|
| Protein sequence | MNHPIIPIAV VQAASKERKR QAPKGRRVEP SALADVQRLL GSESRQADLL IEHLHKIQDH
FGHLSAAHLA ALAQEMRLAQ TEVYEVATFY HHFDVVKEGE AAPAPLTVRV CDGLSCEMAG
ARDLLDRLPA LLGREVRVIA APCIGRCEQA PAAVVGQNPV PNATAEAVVA TVAARAVQHA
PEGFFDFSSY RAAGGYALLA QCVSGDRDVE SVLKTMEDSG LRGLGGAGFP AGRKWRIVRA
EAGPRLMAVN IDEGEPGTFK DRVYLERDPH RFLEGMLIAA WAVGIEKIYI YLRDEYHGCR
AMLETELDKL RLAPPMAGMP QIELRRGAGA YICGEESAMI ESIEGKRGMP RLRPPYVAQV
GLFGRPTLEH NFETLFWVRE ILEKGGAWFT SHGRNGRKGL RSFSVSGRVK SPGVKLAPAG
ITIQELIDEH CGGMQDGHTF YAYLPGGASG GILPATMNSI PLDFDTLQPY GCFIGSAAVI
VLSDQDTATN AARNMMRFFH HESCGQCTPC RVGTAKAAHL MEKPKWDLAL LADLSLVMRD
ASICGLGQAA PNPMDCVVKY FPHELA
|
|---|
| |