| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2700 |
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| Symbol | |
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| ID | 4014655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 2841974 |
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| End bp | 2844364 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637942362 |
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| Product | ribonuclease R |
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| Protein accession | YP_549514 |
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| Protein GI | 91788562 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.749256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.419976 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGCTTC ACGAAAAGAG ATTTCCTATC AAAACATCGC ATCAAAATTC CGGCGCATCG
TCCGGACTCC TCGCTGAATT CGAGGGTACG GTTTCCGGCC ACCGCGACGG CCACGGTTTC
GTTCTGCGCG ACGACGGCGA ACCCGACATT TACCTGCCGC CCAACGAAAT GCGCGCGGTG
CTGCACAAGG ACCGCGTCAA GGCACGCATC GTGCGGCACG ACCGGAAAAA CCGGCCCGAA
GGACGCGTCA CCGAAATCAT CGAGCGCTCG CCCAACCCCA TCATTGGCCG TCTGCTGCAG
GAAAGCGGTG TCTGGCTGGT AGCGCCCGAA GACAAGCGCT ACGGCCAGGA TATCCTGATC
CCCAAAGGGG CGACGGGCAC GGCCAAGAGC GGCCAGGTCG TGGTGGTGCA ACTGACCGAA
CCGCCGGCAC TGTTTGGCCA ACCGGTGGGG CGGGTGGTGG AAGTGCTGGG TGAAATTGAC
GATCCAGGCA TGGAGATCGA GATCGCCGTG CGCAAATACG GCGTGCCGCA CGAATTCAGC
GACGAAGCAT TGGCCCTGGC GCGCACCCTG CCCGACGCGG TGCGACCGGC GGATAAAAAA
CACCGCGTGG ACCTTACAGA CATTTCCCTG GTAACCATTG ACGGAGAAGA TGCCCGCGAT
TTTGACGATG CCGTCTATTG CGAGCCTGCC AAAGTGGGTC GTGGCAAGGG CTGGCGTCTG
CTTGTGGCGA TTGCAGACGT GAGCCATTAC GTGGAAACCG GCAGCGCCAT TGACATCGAT
GCCTATGACC GTGCCACCAG CGTGTATTTT CCGCGCCGCG TGATTCCCAT GCTGCCGGAA
AAACTGTCGA ACGGCTTGTG TTCGCTCAAC CCCAATGTTG AGCGCCTGTG CATGGTGTGC
GACATGCTGA TCAACGCCAA GGGCGAGGTT CACGCCTACC AGTTTTACCC GGCCGTGATG
TTCAGCCATG CCCGGCTTAC CTACACCGAA GTAGCCGCCA TTCTGGCCAA CACGCGCGGC
CCCGAGGCGG CGCAACGCAA GGCACTGGTT CCGCACTTGC TGAATTTGCA CGATGTGTAC
CAGGCTCTCC TGAAGGAGCG GGGCGTGCGC GGCGCCGTCG ATTTTGAGAC CACCGAGACC
CAGATCGTGT GCGACGAAGC AGGGCGTATC GAGAAGATCG TGCCGCGCAC CCGCAACGTG
GCGCACCGCC TGATTGAAGA GGCCATGCTG GCGGCGAATG TGTGCTCGGC CGATTTCATC
GAGCAGAGCA AGCATGTGGG TCTCTACCGC GTGCATGAAG GCCCGACCCC TGAAAAGAAG
GAGATGTTGC GCAACTACCT CAAGGCGCTG GGCGTGGGCA TGACGATTGG CGAGGAGCCG
ACGCCCGGTG AGTTCCAGCA GATTGCCGTT GCGACCAAAG ACCGGCCCGA TGCGCAGCAG
ATCCATTCCA TGCTGCTGCG CTCCATGCAG CAGGCTATTT ACACACCGAT CAACAGCGGC
CATTTTGGCC TGGCCTATGA GGCCTATACC CACTTCACCA GCCCCATCCG TCGTTACCCC
GACCTGCTGG TGCACCGCGT GATCAAGGCA GCGCTGACCA AGTCCAAATA CCAGCTGCCG
GTATTGCCCA CACCGGGCGA GGCCGAGGCC AAGCTGTCCA AGCGGCTGGC CTCCCGTGTC
AGGGATCCGT CGGAAAAGCC CAAAAAAATC AGTGCTGACC AGCTGGCCTG GCAGGCTGCC
GGCCTGCACT GCAGCGCCAA CGAGCGGCGT GCCGACGAGG CCAGCCGCGA CGTTGAAGCC
TGGCTCAAGT GCAAGTACAT GCGCGAGCAT CTGGGCGAGG AGTTTGGCGG CGTGGTGACG
GCGGCAACGG GTTTTGGCAT CTTTGTCACG CTGGACGCCA TGTATGTGGA AGGCCTGGTG
CACATCACCG AGCTCGGCGG CGAGTACTTT CGCTTTGACG AGGCCCGGCA GGAACTGCGC
GGTGAGCGCA CCGGCATCCG CTACGCGATT GGCACGCGGG TGCGGGTGCA GGTCAGCCGG
GTCGACCTGG ACGGCCGCAA GATCGATTTC CGCCTGGTGC ATGAGGGCGA AGCGTTGCTG
GGCCGTGCCA TGAAGGACAA GACCGGCGGC CATTCCGGGG AGTTGCCGGC GCAGGAGCGG
GGTACTTCTT CGCGCAAGGC CGGGGGGCAG CGTGCAGGCA AGGGCGCAGG AAAACGCTCC
GAGGCGCGCT CCGGCGGCCG CGGTACGGGT AGCGGGACCG CAAGGCGAGA CGCCGTCACG
GACCGAGGCG CCGACAGGAC ACCCGAATCG CCGATTCAGG CGCTCAAGGC TGCGGTGAAA
AAATCGGCCG GCAGTGCCAG TCGGAAGCAG GGAAAAAAGC CTCGCCGCTG A
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| Protein sequence | MTLHEKRFPI KTSHQNSGAS SGLLAEFEGT VSGHRDGHGF VLRDDGEPDI YLPPNEMRAV
LHKDRVKARI VRHDRKNRPE GRVTEIIERS PNPIIGRLLQ ESGVWLVAPE DKRYGQDILI
PKGATGTAKS GQVVVVQLTE PPALFGQPVG RVVEVLGEID DPGMEIEIAV RKYGVPHEFS
DEALALARTL PDAVRPADKK HRVDLTDISL VTIDGEDARD FDDAVYCEPA KVGRGKGWRL
LVAIADVSHY VETGSAIDID AYDRATSVYF PRRVIPMLPE KLSNGLCSLN PNVERLCMVC
DMLINAKGEV HAYQFYPAVM FSHARLTYTE VAAILANTRG PEAAQRKALV PHLLNLHDVY
QALLKERGVR GAVDFETTET QIVCDEAGRI EKIVPRTRNV AHRLIEEAML AANVCSADFI
EQSKHVGLYR VHEGPTPEKK EMLRNYLKAL GVGMTIGEEP TPGEFQQIAV ATKDRPDAQQ
IHSMLLRSMQ QAIYTPINSG HFGLAYEAYT HFTSPIRRYP DLLVHRVIKA ALTKSKYQLP
VLPTPGEAEA KLSKRLASRV RDPSEKPKKI SADQLAWQAA GLHCSANERR ADEASRDVEA
WLKCKYMREH LGEEFGGVVT AATGFGIFVT LDAMYVEGLV HITELGGEYF RFDEARQELR
GERTGIRYAI GTRVRVQVSR VDLDGRKIDF RLVHEGEALL GRAMKDKTGG HSGELPAQER
GTSSRKAGGQ RAGKGAGKRS EARSGGRGTG SGTARRDAVT DRGADRTPES PIQALKAAVK
KSAGSASRKQ GKKPRR
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