Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_2613 |
Symbol | |
ID | 4014723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 2743464 |
End bp | 2745098 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637942275 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_549427 |
Protein GI | 91788475 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0609714 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCAAC CAGACCACCC GGCTTCCGAC CTCCCGCCCA CTCAGCCGGG CGAAGATGAA AATAAACCTG CTGCGACAGA AAAATCCGGG CAGGACGCCC CTGATTTAAT AGCTGATAAG CCCCAAGAAA AGGCCGTGGC GTTAGCGCAG CCCGCCGGAC AGCCGGTGGC GCAGCCTGCG ACCAGCACTA TCCGTTTCGA GGACGTGGTG ACCGGGCAGT TTGACGCTGA TGAAGACGAT GTGGCGCTCG AGTTGCCCAA GCGGGTGCTG TCGCCTCAGC CGGAAACCCC CAAGCTGCAC AAGGTGCTGG CGCAAGCCGG GTTGGGCTCC CGCCTGGAGA TGGAGCAGCT TATTCTCGAG GGACGCATTT CGGTCAATGC CGAGCCGGCT CACATCGGGC AGCGCATCCA GTTCGGCGAC ACCGTCAAGG TCAACGGTAA GCCCATTCGC GTGCGAATTG ATCCGCCGCC GCCTCGCGTG ATTGCGTATC ACAAGCCCAG CGGAGAGGTT GTGACGCACG ACGATCCGCA AAACCGGCCC ACGGTGTTCC GGCGCTTGCC CAAATTGTTT CAGGGTAAAT GGCAGTCCGT CGGGCGTCTT GACCTGAACA CCGAAGGCTT GCTCTTGTTG ACGAGTTCGG GCGAGCTGGC CAACAAGCTG ATGCATCCGC GCTTTGGCCT AGAGCGCGAG TATGCGGTGC GGGTGTTGGG TGCGCTGAGC AACGAGGAGA AAAAGCGCCT GCTGGAAGGC GTGACCCTGG ATGATGGCGT GGCGCAGTTC AGCTCCATCG AGGCCGGTGG CGGCGAGGGT GCCAATTGCT GGTACCGGGT CACCATATCC GAGGGGCGCA ATCGTGAGGT TCGCCGCATG TTCGAGGCGG TGGGCCACGC GGTCAGCCGT CTCATTCGGA TCCGCTACGG CGCCATGCTG TTGCCGCGCG GACTGAAGCG GGGCGCATTC GTCGAACTGG ATGAACGGGA TATCTGGGCG CTGACCAATG CGGTCACCCG CTCCGAGTCC CGGGCGGATC CGCGGGGCGC GCCCAAACAC CCGGGTCATG TTCGCGGCGA CGAAGGTGGC GAATTCCGCC CAGGCCGCGG CCCTCGCCGA AATGAGCGCT CGCGCGGTGA CCGCGGGCGC CTGCCGGCCC CCGAGAGCGG GCAAGCCGAT GACTTTCAGC CCGCCGATGC CGATGCCGAG CAGGAGCCCA ATGAGCTGCA GCCGCCAATG CACCGGACGG ACTCTGCGCC CAGGGGCAAC AGGCGCCGCG GGGGGAAAGG TCGTGGGCAG GGGGGTAACC CCGGTTCACC CCCTCGCTTT GGACAGGCTG CGGGAAATGG TCCGCAGGGA CCAAAGCGGC GCGATGACCG TGGGGACCGG GGTGACAAAA GCGCCGGGGG GGCCCAGCAG CCCGATCCGA TGAAGACATC CTTTGGTTAT ATCGGTGCGG ATACCTTCAC CCGGCAGCGG CAAGGTCAAG GTCAAGGTCA AGGTCAGGGG CAACGCCGCA GTGGCGGCGG GGGATCTGGC ATGGGCGGTG CCGGTGGGGG GCAGCGCCGT GGCGGCGGGG GTGGTGGCGG AAACCGCGGA GGCGGCAATC GTGGTGGTGG CGGTAATCGC GGCGGAAATC GTTGA
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Protein sequence | MNQPDHPASD LPPTQPGEDE NKPAATEKSG QDAPDLIADK PQEKAVALAQ PAGQPVAQPA TSTIRFEDVV TGQFDADEDD VALELPKRVL SPQPETPKLH KVLAQAGLGS RLEMEQLILE GRISVNAEPA HIGQRIQFGD TVKVNGKPIR VRIDPPPPRV IAYHKPSGEV VTHDDPQNRP TVFRRLPKLF QGKWQSVGRL DLNTEGLLLL TSSGELANKL MHPRFGLERE YAVRVLGALS NEEKKRLLEG VTLDDGVAQF SSIEAGGGEG ANCWYRVTIS EGRNREVRRM FEAVGHAVSR LIRIRYGAML LPRGLKRGAF VELDERDIWA LTNAVTRSES RADPRGAPKH PGHVRGDEGG EFRPGRGPRR NERSRGDRGR LPAPESGQAD DFQPADADAE QEPNELQPPM HRTDSAPRGN RRRGGKGRGQ GGNPGSPPRF GQAAGNGPQG PKRRDDRGDR GDKSAGGAQQ PDPMKTSFGY IGADTFTRQR QGQGQGQGQG QRRSGGGGSG MGGAGGGQRR GGGGGGGNRG GGNRGGGGNR GGNR
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