Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_2549 |
Symbol | |
ID | 4014776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | + |
Start bp | 2670136 |
End bp | 2671680 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637942211 |
Product | type II and III secretion system protein |
Protein accession | YP_549363 |
Protein GI | 91788411 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.124732 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.115348 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACAT ATTCCACCGG GGCAAGACCG ACTTTGTTGG GCGTGGCGCT TGCTGTAGCA GGCGTGATGG CTGCGTCAAC GCTGGCGCAT GGGCAGGTCG CTATCGAGGC AGGCAATCTC GCAGCGAAAA ATCCACCGAC AGCCACTTCC GGGCCAGGTA AACAAGCCGC AACCGCCCAG CCCAAGGCCG TGGTCACTCA AGCGCGAGCC CCGATCACCG GCAAGGTCGA ATTGGCACCC CAAATCAACC TATCGGAGGG AAAATCCACC CTGATGCGCC TGCCCTCCCC GGCAACACGG CTTTCCGTGG GTGACGCGCG AATCGTCGAT GTGATTCTGC TCAACCCCAG CGAGCTGTAC ATGCTCGGCA AATCTGTTGG CTCCACCAAC CTCATCCTCT GGAACAAGGC CAACGACGCG ACCATCATCG ACATTGCGGT CGGCATGGAC ACCGTGGCGC TGCGCTCGCG GCTCGAGCAG ATGTTCGCCA GCGAAAAAGA TCTCAAGATC ACAACGGCCG CCGACACCCT GATCCTCTCC GGCATGGTTT CCGATGTGGT CAAGGCTGAT CAGATCCTTT CGGTCGCCAA TGCCTACGTG CAGCGCAGCT CGCGCAGTGG GCAGGCTGGC GGCGCATCGG GCGGCTCGGC GGGTGGCCAG CAGTCCGACA GTGCCAAGGT CGTCAACATG CTCTCCATCG CTGCGCCGCA GCAGGTCATG CTGGAAGTGC AAGTTGCCGA GGTCTCCAAG ACGCTGGCAG ACCAATTGGG AGCCAGCATC GGCGGCCGCA AAACAACCGG AAGCTGGACC TACACCTTGC TGTCCAACCT GCTCACCGGC GCCGCCAGCA GTATCGGAGC TGTCAAGAAC AGCGGGAATT TTTTGACCAT TGATGCACAA AAAGGCGATG GCCTGCTCAA GATATTGGCT GAACCCACGA TCATGGCCAT CAGCGGACAG GAAGCCAGCT TTCTGGCTGG CGGGAAAATC TTCATACCCG TCAAGTCAGG AAACAACGGT GAAATCGCGC TGGAAGAGAA AGAATTCGGC GTTTCGGTGA AGTTCCTGCC CACCGTCCTG GAAGGCGGCC GGATCAACCT CAAAGTCGCG CCCGAAGTGT CGGATTTGAA CCGCCAGGGC GTAGGCATTT CGGCCACCGG TTCGAGCACC ACGGCAATTT TGCCTTCATT CACCACACGC CGCGCAAGCA CCACCGTTCA GCTTTTTGAC GGCCAGAGCT TCGCCATCGG CGGCCTGATC AAGAACAACG TCACAGCCAA CATCAACGCC TTCCCGCTGC TCGGCGAAGT ACCCGTGCTT GGTGCGCTGT TTCGCAGCAG CGACTTCCAG ACCGACAGGT CAGAACTGGT GTTTATTGTG ACCCCGCACC TGGTCAAGCC GCTGCCGGCA GATTACAAAC TGCCGACCGA CCCCTACATC CAGCCCAGCC GCTCCGAGTT CTTCCTCGGC GGAAAAATGG AAGGTGCCGC TCCGCCAGAA GGCAATAAGC CGGCTGGTCC CGCAACCGGC TTTGAAGTGA AATAA
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Protein sequence | MKTYSTGARP TLLGVALAVA GVMAASTLAH GQVAIEAGNL AAKNPPTATS GPGKQAATAQ PKAVVTQARA PITGKVELAP QINLSEGKST LMRLPSPATR LSVGDARIVD VILLNPSELY MLGKSVGSTN LILWNKANDA TIIDIAVGMD TVALRSRLEQ MFASEKDLKI TTAADTLILS GMVSDVVKAD QILSVANAYV QRSSRSGQAG GASGGSAGGQ QSDSAKVVNM LSIAAPQQVM LEVQVAEVSK TLADQLGASI GGRKTTGSWT YTLLSNLLTG AASSIGAVKN SGNFLTIDAQ KGDGLLKILA EPTIMAISGQ EASFLAGGKI FIPVKSGNNG EIALEEKEFG VSVKFLPTVL EGGRINLKVA PEVSDLNRQG VGISATGSST TAILPSFTTR RASTTVQLFD GQSFAIGGLI KNNVTANINA FPLLGEVPVL GALFRSSDFQ TDRSELVFIV TPHLVKPLPA DYKLPTDPYI QPSRSEFFLG GKMEGAAPPE GNKPAGPATG FEVK
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