Gene Bpro_2399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_2399 
Symbol 
ID4014935 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp2495094 
End bp2499302 
Gene Length4209 bp 
Protein Length1402 aa 
Translation table11 
GC content63% 
IMG OID637942064 
ProductATP-dependent helicase HrpA 
Protein accessionYP_549217 
Protein GI91788265 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01967] ATP-dependent helicase HrpA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCAGCTT TGACTGCTGA CTCTTTCTTG CCGCTTTCCC CGTCTCCCTC CTTGATCCCC 
CTGGCCATTA CCTTTCCCGA GTCGCTGCCG GTCTCCGGCA AGCGCGATGA CATCACCGCT
GCGCTTCAGG CGCACCAGGT GATCATCGTT TGCGGCGAAA CCGGCTCGGG CAAAACCACC
CAGCTGCCCA AGATCGCACT GGCCATGGGC CGGGGCAAGC TCAATTACCC GGCGGGCCAG
GGAAAACTGA TCGGCCACAC CCAGCCGCGC CGCATCGCTG CCTCCAGCGT GGCCAAGCGG
ATTGCCGAAG AGCTGAAAAC ACCACTGGGC GAGGTGGTGG GTTACAAGGT GCGCTTTCAG
GACCGGCTGA GCCGTGATGC GTCAGTCAAG CTGATGACCG ACGGCATCCT GCTGGCCGAG
ACGCAGACCG ATCCGCTGCT CAGGGCCTAC GACACCCTCA TCATTGACGA GGCGCACGAG
CGCAGCCTGA ACATCGATTT TTTGCTGGGC TATTTGCGCC AGCTGCTGCC GCGCCGGCCC
GACCTGAAGG TGATCATCAC CTCGGCCACC ATTGATGCGC AGCGTTTTGC TGACTATTTC
GCGTCAAGCG CGCCGGCGCC GGGCCGCCCC AAGCCGGGCG CAGCCCCTGA GGGGCTGGAG
CCTGTGGCTC CAAGCCAGCT TGAGCAGGAT TGGACAGGCG ACAGAGGCGA CGCGTCTCGC
GAGCCGCGGC CTGCAAGGCC TCGCGACGAC GCGCAGCGCG GAGCGTGGGG GCCAAAGATT
CCCGCGCCCG TCATCATGGT GTCCGGCCGG ATGTTTCCGG TCGAGCAGCG CTACCGGCCC
TTTGAGGAGT CGCGTGACTA TGACTTGAAC GACGCGATCG CCGACGGCGT TGATGAACTC
TGGCAAAACC CGCACAGCGC GGGCGACATC CTGGTGTTTC TGCCGGGCGA GCGCGAGATC
CGCGAAGCTG CCGACCATTT GCGCAAGCAT CTTGCCCACC AGCCACTGAC CCGCAACGCC
GAAGTGCTGC CGCTGTTTGC GCGCCTGAGC CAGGCCGAGC AGGACCGGAT TTTTGACGGA
CACACCGGCC GGCGCATTGT GCTGGCCACC AACGTTGCGG AGACCTCGCT CACGGTTCCG
GGTATCCGGT ACGTCATTGA CGCAGGCACG GCGCGCGTCA AGCGCTACAG TTTCAGGAGC
AAGGTGGAGC AACTCATGGT GGAGCCGGTG TCGCAGGCGG CGGCCAACCA GCGCGCCGGG
CGTTGCGGCC GGGTGGCGGA CGGCATTTGC ATACGTCTCT ACGATGAGCA GGATTTTGTG
GGCCGGTCCC GCTTTACCGA CCCTGAAATC CTGCGCAGTT CACTGGCGGC GGTGATTTTG
CGCATGAAGG CGCTGCACCT GGGCGCGGTG GAAGACTTTG CCTTCATCGA GCCGCCGCAG
CGACGCGCCA TAGCCGACGG TTACCAGTTG CTGGCCGAAC TGGGTGCCGT GGACGATGAC
AACGAACTGA CGCCGGTGGG CCGCACGCTG GCCAAGCTGC CGCTGGATCC GCGCGTGGGC
CGCATGATCC TGGAGGCGAA GGACCGGCAG GCGCTGGACG AAGTGCTGGT AATTGCCAGT
GCCCTGAGCG TGCAGGATGT GCGCGACCGG CCCATGGACA GGCAGGCACA GGCCGACCAG
GCGCACGCCA AGTTTGACGA CGAGAAAAGC GAATTCAGCG GTTATTTGAA GCTCTGGAAA
TGGCTGGGTG ATTCGCGGGG AGGCAGGCCC TCACCCCAAC CCTCTCCCAA AGGGCGAGGG
GGTAAAACCG AATTACTCCC TCTCCCCCTG GGAGAGGGCA GGGGTGAGGG CTCCCCGGTC
CACAAAATTT CCAACCGCCA GTACGAAACC CTGCTCCGCG AAAACTACGT CAACGTCCGC
CGCGTGCGCG AGTGGCGCGA CATTCATTCG CAACTGCACA GCGTGGTGGG TGAACAGGGC
TGGCACCTGA ATGAGCGGCC CGCCAGTTAC GAGCAGCTGC ATTTGTCCAT GCTCTGCGGC
CTGCTGGGCA ACATTGGGTG CAAGAGCGAC GAGGAAGACT GGTACCTGGG CGCGCGCGGC
ATCCGGTTTT ATCGGCACCC CGGCGCCAAG CTCAGTAAAA AACCGGGCCG CTGGATTGTG
GCGGCCGAAC TGGTGGAAAC CACGCGGCTG TTTGGCCGCG GCATCGCCAA CATCGAGCCG
CAGTGGATAG AGCAGGTGGC CGGCCATCTC TTGAAGAAGC AGCTGCTGGA CCCGCACTGG
GAAAAGAAGG CTGCACAGGT GACCGCGCTG GAGCGTGCGA CGCTTTACGG ACTGGTGGTT
TACAACGGCC GGCGGGTCAA TTTTGGCCGC GTTGACCCGG TGTCGGCGCG TGAAATTTTC
ATCCGCGAAG CGCTGGTCGC GGGCAACTGG GACACAAAGT TGACCTTCCT GGCGGCCAAC
CTCAGGCTGG TCCAGCAAGT GCAGGACCTG GAGCACAAGG CGCGCCGGCA GGACGTGCTG
GTGGACGAAG AGCTGATTTA CGCTTTTTAT GACCAGCAGC TGCCTGCCGA CGTGTGCAGC
GGCGCGAGCT GCGAGAGCTG GTACAAGGAC GAGGTCAAAA AGCAACCCAA ACTGTTGCTG
CTCACGCGAG AGGAGTTGAT GCGCCACGAA GCGGCAGGCA TCACGACACA GGCCTTTCCC
AAAACCCTGC GTCTGGGCGG TGTGGACTGC ATGGTCACTT ATCTGCATGA GCCGGGTGAC
CCCAAAGACG GCGTGACGGT AGACGTACCG CTGTTTGCGC TCAACCAGGT CAATGAAGAG
CGCTGCGAGT GGCTGGTTCC CGGCATGCTC AAGGACAAGG TGCAGGCGCT CATCAAGACC
CTGCACCAGC GCCCGCGCTC ACGTCTGGTG CCGCTGCCCG AGACCGCTGC GCGCATGGCG
GGGCAGCTGC TGCAGCCCGA AGTGTTTGGC AGTGGATCGC TCACGGATGC GATCCTGAAG
CTGGTGCGCG ACGCGACCTC GCTCGACATC AAGCGCGCAG ACATGAAGCT GGACATGCTG
CCCGCCCATC TTTTCATGAA CTTCCGGGTC ATTGACGAGC ATGGCCGGCA ACTGGGCGCA
GGCCGCAACC TGGGCGCGCT CAAAGGTGAG TTGGGCCCGC AGGCGCGCGG CGCGTTTCAG
GCGCTGGCCG GGCTCAAGAA TCTGGCCAGG CCTGCTGCTT CAGCGCCCAA TGAAGAATCA
GATCGACCTT CAGCTCAAGT GCCTACTGGG CAAGCGGCTA TCAAAAATGT AGCCAAAGGA
AGTACCCAAT CCGAGAGCCA TCCCGTCAAA GTGGCGGAGC GCTACACCAG CTGGAGCTTT
GGCGAGCTGC CGGAACTTAT GGAAATCCGC AAGGGAAGCC AGACATTGAT CGGTTTTCCG
GCCCTCATCG ACCTTGGGGA TGCCGTGACC ATCGAGGTGT TTGACGAACC CGACCTGGCC
GCGGTCAAAC ACCGCGCCGG CTTGCGGCGC CTGTTCTCGC TGCAGATCAA GGACGCACTC
AAGTACCTCG AAAAGAACCT GCCCGATTTG CAGAAAATGG CCACGGCCTA CATGCTGGTC
GGGCGTGCCG CCGACAACTC CGGCGGCGGA ACGCTGGAGG AGCTGCGTGC GCAAATCATC
GAGGTGGCGC TGGACCGGGC GTTTTTGCTC GATCCCTTGC CGACGGGCGA GGCTGATTTC
AAGCGACGGG TGGACGACGG GCGAGGGCGC CTGACCTTGA TCGCCAGCGA AGTGGCACGG
CTGGCGGCCG GCATTCTGAC CGAATACGCC GTGGCCCAGC GCAAGATCAA GGACACCAAA
AATGCGGCGG AGGCTGTGGC CGATGCCAGC CAGCAGCTGC AGCGCCTGAT GCCCAAACGC
TTTTTGACCA CCACACCCTA CCCGCAGCTG CAGCACTTTG TTCGCTACCT GAAGGCGATC
ACGTTGCGCC TGGAGAAATG GCGAGCCGAC CCGGCACGTG ACGCAGCGCG GCTGGCCGAG
TTGCGCCCGC AGGAGCAGCG CTACTGGCGC CTGGTGGCCG AGCGCAAAGG CGCTACCGAT
GCACGCATGC AGGAGTTTCG CTGGCTGCTG GAGGAGTTGC GCGTGAGCTT CTTCGCACAG
GAGCTGCGCA CGCCACAACC GGTGAGCGTG AAACGGCTGG ACAAGGCCTG GCAGCAACTG
AATGGTTGA
 
Protein sequence
MAALTADSFL PLSPSPSLIP LAITFPESLP VSGKRDDITA ALQAHQVIIV CGETGSGKTT 
QLPKIALAMG RGKLNYPAGQ GKLIGHTQPR RIAASSVAKR IAEELKTPLG EVVGYKVRFQ
DRLSRDASVK LMTDGILLAE TQTDPLLRAY DTLIIDEAHE RSLNIDFLLG YLRQLLPRRP
DLKVIITSAT IDAQRFADYF ASSAPAPGRP KPGAAPEGLE PVAPSQLEQD WTGDRGDASR
EPRPARPRDD AQRGAWGPKI PAPVIMVSGR MFPVEQRYRP FEESRDYDLN DAIADGVDEL
WQNPHSAGDI LVFLPGEREI REAADHLRKH LAHQPLTRNA EVLPLFARLS QAEQDRIFDG
HTGRRIVLAT NVAETSLTVP GIRYVIDAGT ARVKRYSFRS KVEQLMVEPV SQAAANQRAG
RCGRVADGIC IRLYDEQDFV GRSRFTDPEI LRSSLAAVIL RMKALHLGAV EDFAFIEPPQ
RRAIADGYQL LAELGAVDDD NELTPVGRTL AKLPLDPRVG RMILEAKDRQ ALDEVLVIAS
ALSVQDVRDR PMDRQAQADQ AHAKFDDEKS EFSGYLKLWK WLGDSRGGRP SPQPSPKGRG
GKTELLPLPL GEGRGEGSPV HKISNRQYET LLRENYVNVR RVREWRDIHS QLHSVVGEQG
WHLNERPASY EQLHLSMLCG LLGNIGCKSD EEDWYLGARG IRFYRHPGAK LSKKPGRWIV
AAELVETTRL FGRGIANIEP QWIEQVAGHL LKKQLLDPHW EKKAAQVTAL ERATLYGLVV
YNGRRVNFGR VDPVSAREIF IREALVAGNW DTKLTFLAAN LRLVQQVQDL EHKARRQDVL
VDEELIYAFY DQQLPADVCS GASCESWYKD EVKKQPKLLL LTREELMRHE AAGITTQAFP
KTLRLGGVDC MVTYLHEPGD PKDGVTVDVP LFALNQVNEE RCEWLVPGML KDKVQALIKT
LHQRPRSRLV PLPETAARMA GQLLQPEVFG SGSLTDAILK LVRDATSLDI KRADMKLDML
PAHLFMNFRV IDEHGRQLGA GRNLGALKGE LGPQARGAFQ ALAGLKNLAR PAASAPNEES
DRPSAQVPTG QAAIKNVAKG STQSESHPVK VAERYTSWSF GELPELMEIR KGSQTLIGFP
ALIDLGDAVT IEVFDEPDLA AVKHRAGLRR LFSLQIKDAL KYLEKNLPDL QKMATAYMLV
GRAADNSGGG TLEELRAQII EVALDRAFLL DPLPTGEADF KRRVDDGRGR LTLIASEVAR
LAAGILTEYA VAQRKIKDTK NAAEAVADAS QQLQRLMPKR FLTTTPYPQL QHFVRYLKAI
TLRLEKWRAD PARDAARLAE LRPQEQRYWR LVAERKGATD ARMQEFRWLL EELRVSFFAQ
ELRTPQPVSV KRLDKAWQQL NG