| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2352 |
|---|
| Symbol | |
|---|
| ID | 4015005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 2449487 |
|---|
| End bp | 2450695 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637942018 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_549171 |
|---|
| Protein GI | 91788219 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0528822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACA ATCCAGCTTC AACCCCGCCC CAGCCCCTGG CCGGCTTGCG CGTCGTCGAA
TTCACCCACA TGGTCATGGG CCCCACCTGC GGCATGGTGC TAGCCGACAT GGGGGCCGAG
GTCATCAAGG TCGAGCCGAT CGACGGCGAC CGCACCCGCC GCCTGCTGGG CGCCGGCTCG
GGATTTTTCC CGCTGTTCAA CCGCAACAAA AAAAGCATAG GCATTGATTT ACACGATGCC
GCGGGCGTGG AAGTGGCGCG CAAGCTCTGC GCCAGCGCCG ATGTGGTGGC CGAAAACTTC
AAGCCCGGCA CCATGGCCAA ATACGGGCTC GACTACGCCA CCTTGAGCGC CGCCAATCCA
CGCGTTATTT ACGTCAGCCA CAAGGGGTTT TTGCCCGGCC CCTACGACCA CCGCACCGCG
CTGGACGAGG TGGTGCAGAT GATGGGCGGC CTGGCCTACA TGACCGGCCG CCCCGGCGAC
CCGCTGCGCG CCGGCACCAG CGTGAACGAC ATCATGGGCG GCCTGTTTGG CGCCATCGGT
GCGCTGGGCG CGCTGATCCA GCGCGGCATC AGCGGCAAGG GCATGGAAGT TCAGTCGGCG
CTGTATGAAA ACAATGTGTT CCTGATGGGC CAGCACATGT TGCAGTACGC CATGACCGGC
AAACACCCTG CCCCCATGCC CGCCCGCGAC AACCCCTGGG CGGTGTACGA CGTCTTCACG
GTGAAAGACG GCGAGCAGAT ATTCCTGGCC GCCGTGAGTG ACGCGCAGTG GCAGACCTTT
TGCACCGTGC TGGGTTTTGA CGACCTGAAG TGCGATGCCG CAATGGTGAC CAACAACCAG
CGCGTTGAGG TGCGCCCGGC GCTGCTCAAG GATTTGGCCG CACGGCTGGC CCCGCGCAGC
GCCGCCGAGC TCTCAAGTCT GATGGAAAAA GCCGGCCTGC CCTTTGCGCC GATTCGCCGG
CCCGAGGACC TGTTCGACGA CGAGCACCTG CTGGCCACCG GGGGCCTGGC CGATGTGCGC
CTGCCCGACG GCCCGAAAGC CGGGCAGACC GTTAAAACTA CCCTTTTTCC CATCACCATG
CAGGGCCAGC GCCTGGGCGT GCGCCTGCAC CCGCCCACCT TGGGCGAACA CACGCAGGAA
CTGCTCTCGG GACTGGGCTA CAGCACCAGC GCCATCGAGA ATTTGCATTC GCAGGCGGCC
GTGAGCTGA
|
|---|
| Protein sequence | MQNNPASTPP QPLAGLRVVE FTHMVMGPTC GMVLADMGAE VIKVEPIDGD RTRRLLGAGS
GFFPLFNRNK KSIGIDLHDA AGVEVARKLC ASADVVAENF KPGTMAKYGL DYATLSAANP
RVIYVSHKGF LPGPYDHRTA LDEVVQMMGG LAYMTGRPGD PLRAGTSVND IMGGLFGAIG
ALGALIQRGI SGKGMEVQSA LYENNVFLMG QHMLQYAMTG KHPAPMPARD NPWAVYDVFT
VKDGEQIFLA AVSDAQWQTF CTVLGFDDLK CDAAMVTNNQ RVEVRPALLK DLAARLAPRS
AAELSSLMEK AGLPFAPIRR PEDLFDDEHL LATGGLADVR LPDGPKAGQT VKTTLFPITM
QGQRLGVRLH PPTLGEHTQE LLSGLGYSTS AIENLHSQAA VS
|
|---|
| |