| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2122 |
|---|
| Symbol | |
|---|
| ID | 4015233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 2213020 |
|---|
| End bp | 2214339 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637941792 |
|---|
| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
|---|
| Protein accession | YP_548947 |
|---|
| Protein GI | 91787995 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.580751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.682676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCAC TGAGTTTGAC GCTGCTGATC TTTGGCAGCA TGCTGGCCCT GATGGCCGTG
CGCGTGCCCA TCGCTGTCAG CATGTTCGGG GCGGGTGCCA TCGGCTATGT CACGCAAACG
GGTTGGGCGC CTTTTGCAAG TTTCCTGAAC ACCCAGGCTT TTGCACGCTT TGCCGGCTAC
GACCTCTCGG TGATTCCGCT GTTCATCCTG ATGGGGCACT TTGCCACCAA GGGCGGTATC
AGCAAGTCGC TGTTTGAATT TGCCGCAGGT GTCATGGGGC GCTTCAAGGG CGGGCTGGCC
ATGGCCTCCC TGCTGGCCTG CGCAGCGTTC GGCGCAATCA GCGGTTCCTC GGTGGCGACC
GCGGCCACCA TCACCGGGGT TGCCTTGCCT GAAATGCAGC GCCACGGCTA TTCGGGCCGG
CTGGCCACCG GAACGCTGGC TGCAGGCGGC ACGCTGGGCA TCCAGTTGCC ACCTTCCATC
GTGCTGGTGA TCTACGCGAT TCTTACCGAG CAGAACATCA GCAAGCTGTT CGCTGCTGCG
GTAATTCCCG GCATTATTGC CATGTGCGGC TACATGATCG CAGTGGCGAT TTATGTGCGC
GTTGTGCCAG GCCACGCACC TGAGGTTCAG GCAGACCGTC AGGGCGTGAC GATGCACTCC
CTGATCGGCG TGACCCCCAT TGTCGTGATT TTTCTGCTGG TCTTTGGTGG CATCTACGGC
GGGTTTTTCA CCCCTACCGA AGGTGCTGCC GTGGGGGCGG CTTCGACGTT TCTGACCGCC
CTGCTCAAGG GCGAGATGAC CCTGGACAAA TTCAAGGAAT GCTTTTACGG CACGGCGGTA
AGTGCCGCCA TGATTTTCCT GATTTTCATC GGCGCCGACC TGATGAACTC GGCGCTGGCG
CTCACGCAGG TTCCCAACCA GTTGGCCGCG CTGGTCGGCG GCTGGGGACT CTCGCCGCTG
GTGGTGGTGG TCGCGATCCT GCTTTTCTAT GTGTTGCTCG GCGCCGTCAT GGACGAGCTC
TCCATGCTGC TCTTGACCAT TCCCATCTTT TTCCCCATGG TCATGGCGCT CGACTTTGGC
ATGGCAAAAG ATTTAGTAGC CATCTGGTTT GGCATCATGG TGCTGATGAC CGTGGGGTTC
GGCCTGATTG CACCGCCCGT CGGGCTGAAT GTCTACATCG TCAATGGCCT GGCCAAAAAT
GTGCCCATGA GCGAAACCTA CCGGGGGGTG ATGCCTTTCC TGTTCAGCGA CGTGCTGCGC
ACCATGCTGT TCCTGTTCTT CCCCATCATT CCGCTGTGGC TGGTGGGCTT TATCAAGTGA
|
|---|
| Protein sequence | MSSLSLTLLI FGSMLALMAV RVPIAVSMFG AGAIGYVTQT GWAPFASFLN TQAFARFAGY
DLSVIPLFIL MGHFATKGGI SKSLFEFAAG VMGRFKGGLA MASLLACAAF GAISGSSVAT
AATITGVALP EMQRHGYSGR LATGTLAAGG TLGIQLPPSI VLVIYAILTE QNISKLFAAA
VIPGIIAMCG YMIAVAIYVR VVPGHAPEVQ ADRQGVTMHS LIGVTPIVVI FLLVFGGIYG
GFFTPTEGAA VGAASTFLTA LLKGEMTLDK FKECFYGTAV SAAMIFLIFI GADLMNSALA
LTQVPNQLAA LVGGWGLSPL VVVVAILLFY VLLGAVMDEL SMLLLTIPIF FPMVMALDFG
MAKDLVAIWF GIMVLMTVGF GLIAPPVGLN VYIVNGLAKN VPMSETYRGV MPFLFSDVLR
TMLFLFFPII PLWLVGFIK
|
|---|
| |