| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2114 |
|---|
| Symbol | |
|---|
| ID | 4015225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2204666 |
|---|
| End bp | 2205646 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637941784 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_548939 |
|---|
| Protein GI | 91787987 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.230342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0495653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGCGCCG GCGGATCACA CCCGCCAGCG CCCTCTTGGC TTTCGTACCT CTCTATCTCG
CACCTCACGA TGAAAAAAAT CTTTGCCCGC TGGCTCGACA GCGATGTTGG TCACAGCTTT
CGCACTTCGC CCGTAGCGAT CACTGCCACT GTGGTCGCCT TCATCTGTAT TTTTTGCTCG
GTATTTGCCG GCTGGGTGGC GCCCCACAAC CCGTTTGACT TGAGCACGCT GGAGTTGAGC
GACGCCCGTT TGCCGCCGGC CTGGAGTGCG CAAGGTAGCT CAAAATTCCT GCTCGGCACC
GATGACCAGG GGCGCGACAT TTTGTCTGCT CTGATCTACG GCGCGCGCAT CTCGCTGGTG
GTTGGCGTGG CCTCGGTCAT CCTGTCCATG ATCGTCGGCG TGGCGCTGGG CCTGCTCGCG
GGCTTTCGCG GCGGCTGGAT TGACACCGTG CTGATGCGTC TGTGCGATGT GATGCTCAGC
TTTCCCGCCA TCCTGGTGGC GCTGCTGATC GCTGGCGTCG GGCGCGCGCT CTTTCCCAAT
GCCCACGACT CCGTGGCTTT CGGCGTGTTG ATTCTCTCGA TCACTCTGAC TGGCTGGGTG
CAATACGCAC GCACCGTGCG CGGCTCCACG ATGGTGGAAC GCAGCAAGGA ATACGTGCAG
GCGGCCCGCG TCACCGGTGT GGCGCCGCTG CGTATCATGC GCCGCCATGT GCTGCCCAAT
GTGCTGGGCC CGGTGCTGGT GCTGGCGACC ATTCAGGTGG CCACCGCCAT CATCACCGAA
GCCACGCTGT CGTTTTTGGG CGTCGGCGCA CCGCCCACCT CGCCCTCGCT GGGCACCCTG
ATTCGCGTGG GCAACGACTA CCTGTTCTCG GGCGAGTGGT GGATCACGGT GTTTCCGGGC
TTGATGCTGG TGCTGATTGC ACTGAGCGTC AATCTGCTGG GTGACTGGCT GCGCGATGCT
TTGAATCCGC GGTTGAGATG A
|
|---|
| Protein sequence | MGAGGSHPPA PSWLSYLSIS HLTMKKIFAR WLDSDVGHSF RTSPVAITAT VVAFICIFCS
VFAGWVAPHN PFDLSTLELS DARLPPAWSA QGSSKFLLGT DDQGRDILSA LIYGARISLV
VGVASVILSM IVGVALGLLA GFRGGWIDTV LMRLCDVMLS FPAILVALLI AGVGRALFPN
AHDSVAFGVL ILSITLTGWV QYARTVRGST MVERSKEYVQ AARVTGVAPL RIMRRHVLPN
VLGPVLVLAT IQVATAIITE ATLSFLGVGA PPTSPSLGTL IRVGNDYLFS GEWWITVFPG
LMLVLIALSV NLLGDWLRDA LNPRLR
|
|---|
| |