| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2027 |
|---|
| Symbol | |
|---|
| ID | 4015322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2097817 |
|---|
| End bp | 2098989 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637941695 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_548855 |
|---|
| Protein GI | 91787903 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.423658 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.283543 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CCGTCTTTTC GCTGGTGAGT ATCGCTGCCT TGCTGGCCGC CTGTACCCCA
TCCGCTCCGC CTGAAGAGCC GGTTCGCGCC GTGAAGGTGA TGACTGTGGG GACTGATGCG
TTTTCTTCCA GTCATGAATA TGCGGGTGAA GTCAGGGCCC GGGTCGAGTC CCGCCTGGGT
TTCAGGGTCG GGGGCAAGAT CATCAAGCGG CAGGCCGAGC TGGGCCAACG CGTCAAGGCC
GGCCAGGTGC TGGCCCAACT GGACCCGCAG GATTACAAGC TGGCCGTCGA CGCGGCCCGC
GCCCAGGTTG CAACGGCGAT GACCAACCGG GATCTCGCCG CGGCTGATTT CAAGCGCTAC
AAAGAGCTGA AGGACCAGAG TTTCATCAGT GGCGCGGAAC TGGAGCGTCG CGAAACGACC
TTCAAGGCGG CCCAGGCGCA ACTCGAGCAG GCCCAGTCGC AGCTGGCCGT GCAGAGCAAC
CAGGCCGGTT ATGCCGCGCT GGTGGCCGAC GTCTCGGGTG TGGTGACCGC GGTGGAGGCC
GAGCCGGGTC AGGTGGTAGC CGCCGGGGTG CCGGTGGTGC GCATTGCGGC CGACGGCGTG
CGTGACGTGG TGTTCTCGGT GCCCGAAGAC CGGGTGGCCG GCATCAAGGT CGGTGCACCC
GTCAAAATTC GCGTTTGGGC GCAACACACA GATTTACCCG GCAAGGTGCG TGAAGTGGCT
GCGAGCAGCG ATCCGGTGAC GCGGACCTAC CCTGTCAAGG TTTCTATTGA TGCCAAGGAA
CCGCCCGTAC TGGGCGCCAC GGTGTCCGTG GTGCCTGAAG CGGGGGGCAT TGCCGGTACG
CCGGTCATCA AGCTGCCGAC CACGGCCTTG CGCCAGGAAG GCAATGCCAC GGCGGTGTGG
GTACTCGACA AGGCCAGCAT GACCGTCAAG CCACAGGTGG TCCAGGTCGC CACGGCCGAT
GGCAACGACG TGGTGGTGGC GTCGGGCCTG CAGCCGGGCA TGCTGGTCGT CAGCGCCGGC
GTGCATGTGC TGTCGCCTGG GCAGAAAGTG ACCATTTACC AGCCCAGCGT GGCCATATCG
ACCGCCGCTC CTGCTCAATC AGCGCCTGAT TCGATAGCGA GTCCTGCAAC GGCTGCTGCG
GCTTCCAGCG CATCCGCGTC TGCCGCGAAG TGA
|
|---|
| Protein sequence | MKKTVFSLVS IAALLAACTP SAPPEEPVRA VKVMTVGTDA FSSSHEYAGE VRARVESRLG
FRVGGKIIKR QAELGQRVKA GQVLAQLDPQ DYKLAVDAAR AQVATAMTNR DLAAADFKRY
KELKDQSFIS GAELERRETT FKAAQAQLEQ AQSQLAVQSN QAGYAALVAD VSGVVTAVEA
EPGQVVAAGV PVVRIAADGV RDVVFSVPED RVAGIKVGAP VKIRVWAQHT DLPGKVREVA
ASSDPVTRTY PVKVSIDAKE PPVLGATVSV VPEAGGIAGT PVIKLPTTAL RQEGNATAVW
VLDKASMTVK PQVVQVATAD GNDVVVASGL QPGMLVVSAG VHVLSPGQKV TIYQPSVAIS
TAAPAQSAPD SIASPATAAA ASSASASAAK
|
|---|
| |