| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2000 |
|---|
| Symbol | |
|---|
| ID | 4015331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2068511 |
|---|
| End bp | 2069395 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637941668 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_548828 |
|---|
| Protein GI | 91787876 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.499289 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCT CGACCCTCAT GACCGCCGTG CTGCTGACCG CAGGCCTGGC CGCCACCGCC
AGCGCGCAGA CGCTGAAAAA AGTGGCCGAC AGCAACAAGA TTACCGTGTC TTACCGCGAG
GCGTCGGTGC CTTTCAGCTA CCTGATTGGT TCGACCAAGG CGGTGGGCTT TTCGGTCGAG
CTGACCGAAG CCATCATTGA CGACGTGCGC AAGAAGGTCA AAAAGCCCAA TCTGGAAGTG
GCCTACATGC CCGTGACGTC CCAGAACCGT ATCCCGCTGC TGGTCAACGG AACCTACGAC
CTGGAGTGCG GCTCGACGAC GAACAATTCG GCGCGCGGCA AGGACGTGGC TTTCTCCATC
AACATGTTTT ACACCGGCAC GCGCCTTCTG ACCAAGAAGA CCTCGGGCGT CAAGAACTAC
GCCGACCTGA CCAAGAAAAC CGTTGCGAGT ACCACAGGCA CCACGAACGC CCAGGTGATT
CGCAAGTACA ACACTGAAAA AAACCTGGAC ATGCAGCTGA TCCTCGGCAA GGACCATGAC
GACTCGCTGC TTCTGGTGGA AAGCGATCGC GCCATGGCTT TCGCCATGGA CGACATCCTG
CTGTTCGGCC TGATGGCCAA CTCCAAGAAC CCGGCTGCCT TGCAGGTGGT GGGTGACTCG
CTGCAGGTTG AGCCCTATGC CTGCATGCTG CGCAAGGACG ACCCGGAGTT CAAGAAACTG
GTGGATGGGA CCATTACGCG CCTGATGAAG TCCGGCGAAT TCACGAAGCT GTATGCCAAG
TGGTTCGAGT CACCCATGCC TCCAAAAGGC ACGAACCTCG GCCTGCCCAT GAGTCAGCAG
CTCAAGGACA ACCTGAAGGC GATGAGCGAC AAGCCTGCCA CGTAA
|
|---|
| Protein sequence | MKFSTLMTAV LLTAGLAATA SAQTLKKVAD SNKITVSYRE ASVPFSYLIG STKAVGFSVE
LTEAIIDDVR KKVKKPNLEV AYMPVTSQNR IPLLVNGTYD LECGSTTNNS ARGKDVAFSI
NMFYTGTRLL TKKTSGVKNY ADLTKKTVAS TTGTTNAQVI RKYNTEKNLD MQLILGKDHD
DSLLLVESDR AMAFAMDDIL LFGLMANSKN PAALQVVGDS LQVEPYACML RKDDPEFKKL
VDGTITRLMK SGEFTKLYAK WFESPMPPKG TNLGLPMSQQ LKDNLKAMSD KPAT
|
|---|
| |