| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1979 |
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| Symbol | |
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| ID | 4015385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 2045734 |
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| End bp | 2047503 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637941646 |
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| Product | Lipid A export ATP-binding/permease protein MsbA |
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| Protein accession | YP_548807 |
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| Protein GI | 91787855 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.45322 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGC TGTCAGAGCC CGTACCCGTT AGCTTAGCCG CCAGGCGATC CTTGTGGCAA
AGGGTCGCGC GCGTCTGGCC CTATTTCAGC GGCTCGCGGG CAGGCTGGGC GCTGGCAATT
GGTGCGACCA TTGTTGCCTC CGCAACCGAG CCCTTTGTAC CCGCGCTGCT CAAACCGCTG
CTCGACCGTG GCTTTCAGAG GGATTCCTTC AACCTCTGGC TGGTGCCGCT TGCGCTGATG
CTGCTGTTCA CCGTGCGCGG GTTGTCCGGG TTTTTGGCCC AGTTTGCGCT GGCCAAAGTC
ACCAATGACG GCTTGCTCAA GCTGCGGGGA GCCATGTTTG ACAAACTGCT GAGCGCACGG
CTCACCCTGT TTGCCGACCA AAGCTCCAGC GCCATCGCCA ATACAGTGGT CTATGAGGTC
TTCAACGGCT CCTCGATGTT GATCAACGCC ATCATGAAGC TGGCGCGGGA TGTGCTGACC
CTGCTGGCAT TGATTGGCTA TCTGGTCTAC CTCAACTGGA AGCTGATGCT GGTAGTCGCG
TTGCTGTTTC CGGCCGTGGC ATTTGTCATC CAGGTGTTGT CCAAGCGCCT CTACCGACTC
ACCAAGGAAA GCCAGACCGC TACGGACGAT CTCGCGTATG TGGTCGAAGA AAACGTCATG
GCGCACCGCG ATGTCCGCCT GCATGGCGCG CAGGCCGGCC AGGCCAGCCG CTTCAATCAT
CTCAGCAACT CGCTGCGCCG TCTCTCGATG AAATCCACCG CCGCCTATGC GGGCATGAGC
GCGATCACCC AGGTGCTGGC CGCAATGGCC CTGTCGGCAG TCATTTCCAT TGCCTTGCTG
CAGAGCGCCG AAAATACCAC GACCGTCGGC GGGTTCGTGG CCTTTGTGAC GGCCATGCTG
CTGCTGATTG CCCCCGTCAA AAGCCTGTCG GATGCTGCCA CGCCGGTGAC CCGCGGATTG
GCCGCGCTCG AGCGCGGCCT TGACCTGATG AATCTGACGC CTGACGAAAG CGGCGGCTCG
TTTGTCAAGG CCAGGGCGCA TGGCGACATT GAGTTTGCCG ATGTCAGCGT CATCTACAAA
GCCGACGCCG CTGCAGCCCT TGACCAGTTC AGCCTTTCCA TCAAGGCGGG AGAAACGCTC
GCCATCGTGG GCGCATCCGG CTCCGGCAAG ACGACCCTGG TGAATCTGCT GCCCCGATTT
GTCGAAATGA GTTCGGGCAA TATCTACCTC GATGGTCAGG ACCTTCGTGC GTGGAACCTG
GCGTCGCTGC GTGCGCAGTT TGCATTTGTG AGCCAGCATG TCGTGATGCT CAACAACAGC
ATCGCCGTGA ACGTCGCGCT GGGCCAGCCC GTTGACCGAG CCCGGGTGAC CGAATGCCTG
GCCGCAGCCA ATCTGTCCGG GCTACTGGCC GAATTGCCAG GCGGCATCGA CACAATTCTT
GGCCATAACG CCATGCAGCT GTCGGGTGGC CAGCGCCAGC GGCTGGCTAT TGCACGCGCC
CTTTATAAAA ACGCGCCCAT TCTGGTGCTG GACGAGGCTA CGTCGGCGCT GGATACCGAA
TCAGAACTGG CTGTGCAGGA AGCGATCAAA CGGCTCACCG CCAGCCGCAC CTCGCTGGTC
ATTGCTCATC GACTGTCCAC GGTGCAGCAT GCCGACCGCA TCATCATGAT GGAGGCCGGT
CGAATGATCG AATCCGGCAC CCATGCGGAG CTGCTGGCCA GAAACGGGGC CTACGCTCAC
CTTTACCGGC TTGGTTTCCG GAATACCTGA
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| Protein sequence | MTQLSEPVPV SLAARRSLWQ RVARVWPYFS GSRAGWALAI GATIVASATE PFVPALLKPL
LDRGFQRDSF NLWLVPLALM LLFTVRGLSG FLAQFALAKV TNDGLLKLRG AMFDKLLSAR
LTLFADQSSS AIANTVVYEV FNGSSMLINA IMKLARDVLT LLALIGYLVY LNWKLMLVVA
LLFPAVAFVI QVLSKRLYRL TKESQTATDD LAYVVEENVM AHRDVRLHGA QAGQASRFNH
LSNSLRRLSM KSTAAYAGMS AITQVLAAMA LSAVISIALL QSAENTTTVG GFVAFVTAML
LLIAPVKSLS DAATPVTRGL AALERGLDLM NLTPDESGGS FVKARAHGDI EFADVSVIYK
ADAAAALDQF SLSIKAGETL AIVGASGSGK TTLVNLLPRF VEMSSGNIYL DGQDLRAWNL
ASLRAQFAFV SQHVVMLNNS IAVNVALGQP VDRARVTECL AAANLSGLLA ELPGGIDTIL
GHNAMQLSGG QRQRLAIARA LYKNAPILVL DEATSALDTE SELAVQEAIK RLTASRTSLV
IAHRLSTVQH ADRIIMMEAG RMIESGTHAE LLARNGAYAH LYRLGFRNT
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