| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1953 |
|---|
| Symbol | |
|---|
| ID | 4015396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 2018946 |
|---|
| End bp | 2020934 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637941620 |
|---|
| Product | putative integrase |
|---|
| Protein accession | YP_548782 |
|---|
| Protein GI | 91787830 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0157061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGGGAG CTCAGTACCT ATATCGCCGC GACAGCGGCA CTTACTATAT TCGCCTTTGC
GTGCCAGCGC GTTTGAAGGT GGCGGTCGGC AAAGGTGAAA TCCATCGAAC CACGGGCTGC
CGGGATTACC GGCTTGCCAA GATCGTGGCA GCCGAACTTG CCGCACACTG GCACCGGGCG
ATTCAAGCGC TGGAACGCAT GGACATCTCG AAGATCAAGG CCGGATCCAT CAAGCTGCTT
GGTGACGGTT ACATCCCGTT AACCGATGCG GCTGAGGCGT TAGGCACCAC CCCCTCATCT
CTTGCCCAAC GGCTTACCAT CCGCCAGGCT CATTTCTTTG TCGAGGCGAA CGACTGGCTC
GGCTGGGCGG TAGAAGACAT CCACGAGTCT CTGGAGCACA TCCAGGACGA GCTTGGACAG
GTCGAGGTCG TCATCGATGC GAACAAGATG GGCGGGCCGG CAGCACAGCG TCGGTTCAGT
GGCCTGCTCC GGATCCGCTT TCCTGAAGAA GTGATCGCGA TGGTGCGCAC CAATCAACCG
GCTGGACTGT GTCAGTTCCT GCTGTGGCCA TCCCCCGATC GTGGTTTTGT ATGCGACCTA
CCAGGCCAGC CGGTTGACAG CCAGATGTTG CAGATCCGCC GGATCGATGT TGAGGCCATG
CGCCTGGACC TGGCGGCACA GCTCACCCCG GATATGCTGG CCTCGGCACA TCCAACCCTG
CCCCAGCCGG ACACAACGAC CACCCTACCC ACGCCTTCAA CGGGTATGAC CTTTTTGGTG
TTCCGCGATG AATATTTGAA ACGCAACGCG GGCTTCTGGA AGGCCGACCA GGTGCGCCGA
CGCCAGGACC AGTTTGAGGC ATTTCTTGAA CTGATGGGGG ATCTTCAACT CGCCAAAATA
GACCGGGCCA CGATACGGAC ATTTTCAGAC GAGATCGCAA AAATTCCCGA TGAGCGACAT
AACGTTCGCC GTAAATTCAA GCGCCCCGAC GCAGACTATC AAGAATTGAT CGAGCTGGCC
GAAAAACACA ACTTGCCCAG GTTAACGGTC TCTGCTCAGC AACGGATGCT CGATGGAATT
TCGGAAATTT TCGCGTGGGC TGAACGAGAA ACGCTAATCA CCAGCAATCC AGCCAAGGGG
CTCGGCGGTG AACTGAAAAA ACGCTCAGGA AGCACCAAGG TCAAAGCGCA TGAGCAACGC
GACCCGCTCT CCGACGTGGA CCTTCAGAAG ATATTTTCTG CAGTCTGGTT CACCACGGGA
AGCGGCCTAA AAACTGCCAA AGGCAAGTTC TACACCTACA GGCCGCATTA CTTCTGGCTG
CCCTTGCTCG CCATCTATCA CGGTGGGCGA CTGAATGAGC TGTCACAACT CTACCTCGAC
GACATCAAGA CAAGTGAAAG CGGCGTTCCT TATCTCGACT TTAATTTGTT GGGCGAAGAC
AAGATGGACG TCGACGAAGC AGACCGGAGC GCCGCCACCG ACAAGTCATT AAAAACAGTG
AGTTCGCAGC GCGTAGTCCC CATGCACAAG CACCTGGTGG ACCTGGGCTT CCGGGAATAT
GTGAGTGCAT TGCGGGACGC CGGCTACAAG CGACTTTTCC CGGAGTTGCG TTTTAACAAG
GCTAAGGGCT ACGGCAAGGC GGCCGGGAGC TGGTTCAACG AGCGTTTTCT CGGCAAAGAA
CTCGGTATCC CAAGAAATGG ACGTAAGACG TTTCATTCGA TGCGCCACAA CTTTGCCACA
GCACTGGGCG CCACTGCTAC GCCTACCACC ATAAAGTCTG ACCTAATGGG ACATTCCCGC
GGGCTTGCAC TGGTAGAGGC CCGCTACGAC AAGGGAGGAG ATTTGCTTGA GCGAAAAAAA
GTCATTGACG CAATTCAATA CGCCTTGCCG CCCATTGCCC ACTTCAATAT CAAAGACGGA
ATCCAGGCGA TCAAGGACGC ATTGAAGACA AAGGAATCCC ACAAAAAAAC GAAGAGGTAT
CCGTCCTGA
|
|---|
| Protein sequence | MSGAQYLYRR DSGTYYIRLC VPARLKVAVG KGEIHRTTGC RDYRLAKIVA AELAAHWHRA
IQALERMDIS KIKAGSIKLL GDGYIPLTDA AEALGTTPSS LAQRLTIRQA HFFVEANDWL
GWAVEDIHES LEHIQDELGQ VEVVIDANKM GGPAAQRRFS GLLRIRFPEE VIAMVRTNQP
AGLCQFLLWP SPDRGFVCDL PGQPVDSQML QIRRIDVEAM RLDLAAQLTP DMLASAHPTL
PQPDTTTTLP TPSTGMTFLV FRDEYLKRNA GFWKADQVRR RQDQFEAFLE LMGDLQLAKI
DRATIRTFSD EIAKIPDERH NVRRKFKRPD ADYQELIELA EKHNLPRLTV SAQQRMLDGI
SEIFAWAERE TLITSNPAKG LGGELKKRSG STKVKAHEQR DPLSDVDLQK IFSAVWFTTG
SGLKTAKGKF YTYRPHYFWL PLLAIYHGGR LNELSQLYLD DIKTSESGVP YLDFNLLGED
KMDVDEADRS AATDKSLKTV SSQRVVPMHK HLVDLGFREY VSALRDAGYK RLFPELRFNK
AKGYGKAAGS WFNERFLGKE LGIPRNGRKT FHSMRHNFAT ALGATATPTT IKSDLMGHSR
GLALVEARYD KGGDLLERKK VIDAIQYALP PIAHFNIKDG IQAIKDALKT KESHKKTKRY
PS
|
|---|
| |