Gene Bpro_1878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_1878 
Symbol 
ID4015475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp1941050 
End bp1942450 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content63% 
IMG OID637941547 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_548709 
Protein GI91787757 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID[TIGR03017] chain length determinant protein EpsF 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.950622 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTCC ATCAATTCCT GTTGATCCTG CGGGCCCGCT ACCGGGTGGC CTTGATGATC 
ATTGTGGTCG CCGTGCTGTC GGCTCTGGCG GTCAGCCTGG TGCTGCCCAA GAAATACGTG
GCCGAGACGG CTGTTCTCGT TGACATCCGG TCACCCGACC CGGTCGCTGG CGCTGGCGCT
GTCGTGCCGG GCCTTGTTGC CCCCAGCTAC ATGGCAACCC AGGTCGACAT CATCGGCGGC
GACCGCGTGG CGCAGCGCGT TATCAAAATG CTCAAGCTGG ACGAAAACCC CGGCACGCGG
GAAAGGTGGA TGCAAGCCAC GCAAGGACGC GGAACGATGG AGGCATGGAT CGTCGAGTCG
CTGCAAAGGA GGCTGGAAGT GCGACCTGCA CGGGAGAGCA ATGTGATCAA CATCACGTAC
AAGGGCAGCG ATCCGGACTC TGCGGCCCAG ATAGCCAACG CCTTTGCCCA GGCGTATCTC
GATATCAATC TGGCGCTGAA GACAGAGCCT GCCCGCATCT ATGCGGAATG GTTTGACGAG
CAGACCAAGG CCTCGCGCGC CAAGCTTGAA GTGGCCCAGG CGCGCTTGTC TGATTTCCAG
CAAAAAGCCG GCATCGTCTC CAGTGACGAA CGGGTCGACT ACGAAACCAC CAAGCTGAGC
GAACTCTCGT CGCAGCTGAC CGTCGTTCAG GGGCAAACCA CGGACAGCCA GAGCAAGCGC
AACTCCCGCG GCGACACCGT TGCCGAAGTC ATGCAGAGCC CCCTGATCAA CGGCTTGAAG
GCCGACATCG CGCGGCTCGA AGCCAAGGTG CAGGAAACCA GCGTGAATCT CGGGGCGAAC
CATCCCGTGC GCCAGCGTGC CGAATCTGAA CTGGCCTCCC TCAAGAGCCG GCTTGCCAGC
GAATCGGGGC GCATTTCAGC CTCGATCGAC ACGGCCTATC GTGTGGGCAA GGACCGCGAA
GGCGAATTGC AGGCTGCCGT CGGCGCGCAA AGGTCGCGGG TGCTCATGCT GAACAAGCAG
CGTGACGAGC TCAATGTGTA CCGTCGCGAC GTCGAGGCGG CCCAGCGCGC CTATGAAGCG
GTGAGCCAGA GCGCGTCGCA GACGCGTTTG CAGAGCCTGA CCAACCAGAC CAATGTGGTC
CGCCTCAACA CGGCCACAGC GCCCGCCAAT CCCTCCAGCC CGAAATTGCT GTTCAATCTG
CTGATTGCGG CTTTTGGCGG AACATTGCTC GGCGTGGCCT GTGCCTTGTT GCTGGAGCTC
GCCAACCGCC GCGTGCGGTC CTCGGAAGAC CTGGTGCAGA TGCTGGATCT GCCCGTGCTG
GCCAGCATCA GCTCAAGTGG CAGGTCCCGC CGGCTCCCCG GCTCGGGTCG CCTGGCCCTT
GGTAACGGAA GCACGGCATG A
 
Protein sequence
MTLHQFLLIL RARYRVALMI IVVAVLSALA VSLVLPKKYV AETAVLVDIR SPDPVAGAGA 
VVPGLVAPSY MATQVDIIGG DRVAQRVIKM LKLDENPGTR ERWMQATQGR GTMEAWIVES
LQRRLEVRPA RESNVINITY KGSDPDSAAQ IANAFAQAYL DINLALKTEP ARIYAEWFDE
QTKASRAKLE VAQARLSDFQ QKAGIVSSDE RVDYETTKLS ELSSQLTVVQ GQTTDSQSKR
NSRGDTVAEV MQSPLINGLK ADIARLEAKV QETSVNLGAN HPVRQRAESE LASLKSRLAS
ESGRISASID TAYRVGKDRE GELQAAVGAQ RSRVLMLNKQ RDELNVYRRD VEAAQRAYEA
VSQSASQTRL QSLTNQTNVV RLNTATAPAN PSSPKLLFNL LIAAFGGTLL GVACALLLEL
ANRRVRSSED LVQMLDLPVL ASISSSGRSR RLPGSGRLAL GNGSTA