Gene Bpro_1871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_1871 
Symbol 
ID4015468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp1932805 
End bp1933776 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content58% 
IMG OID637941540 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_548702 
Protein GI91787750 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.360239 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCA ACAAACTCAT CATCGGCATG ACCATGGCCC TCGGTATTGT CGCCAGCGCC 
GCTGCACAGA CCACGATGAA AATCAGTATT TCGACGTCGC AGAATTCCCA CCAGGGTGTC
GCTATTGACA CCTTTGCCAA AGAGGTGGAA AAGCGCACCG GCGGCCGCTA CAAGGTTCAG
ACTTTCTATA GCGGTGCACT GGGCGGCGAA CGCGAATCCA TCGAAGCAGT CCAACTGGGC
ACCCAGGAAC TCGCCTTCTC CTCCACCGGC CCCGTCCCCA ACTTTGTACC GGAGACCAAG
ATTCTCGACG TGCCCTTCCT GTTTCGCGAC AAGGCCCACG CACGCGCCGT ACTCGACGGC
CCCATCGGCC AGGACCTGCT GGGCAAATTT GACGCCAAGG GTTTCAAGGC GCTGGCCTGG
GGCGAAAACG GCTTTCGCCA CATGACCAAC AGCAAGCGTG ACGTGAAGGG CCCCGAGGAT
CTGAAAGGTC TGAAAATGCG GACCATGGAA AACCCGGTGC ATATTGCCGC TTACAAGGGT
TTTGGCATCA TTACCACGCC GATGGCATTC CCCGAAGTGT TCACCGCCCT CCAGCAGGGC
ACGGTCGATG GCCAGGAAAA CCCGCTGTCG GTCATCATTG CGTCCAAGTT TGACCAGGTG
CAAAAGCACC TGTCGCTGAC GGGCCACGTC TACTCGCCCT GCATCTGGGT GATGAACAAG
GCAGTCTTCG ACAAGCTCAG CGCGGCCGAC AAGCAGGCGT TTCTTGACGC CGCCAAGGAA
GGCACCAAGG CCAACCGCGC ACGGGTCGAT GAGGACGACG CCAAAGGGGT CGCCGACCTG
CGCGCCAAGG GCATGACGGT GATTGACAAT ATTGACAAAT CGAAATTTGT CACTGCCCTG
GCACCGGTCA ACGCCGAATT CGAAAAGCAG TTCGGCAAGG CCAACATCGA GAAGATCCGC
AATTACAAGT AA
 
Protein sequence
MKLNKLIIGM TMALGIVASA AAQTTMKISI STSQNSHQGV AIDTFAKEVE KRTGGRYKVQ 
TFYSGALGGE RESIEAVQLG TQELAFSSTG PVPNFVPETK ILDVPFLFRD KAHARAVLDG
PIGQDLLGKF DAKGFKALAW GENGFRHMTN SKRDVKGPED LKGLKMRTME NPVHIAAYKG
FGIITTPMAF PEVFTALQQG TVDGQENPLS VIIASKFDQV QKHLSLTGHV YSPCIWVMNK
AVFDKLSAAD KQAFLDAAKE GTKANRARVD EDDAKGVADL RAKGMTVIDN IDKSKFVTAL
APVNAEFEKQ FGKANIEKIR NYK