Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_1871 |
Symbol | |
ID | 4015468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 1932805 |
End bp | 1933776 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637941540 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_548702 |
Protein GI | 91787750 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.360239 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTCA ACAAACTCAT CATCGGCATG ACCATGGCCC TCGGTATTGT CGCCAGCGCC GCTGCACAGA CCACGATGAA AATCAGTATT TCGACGTCGC AGAATTCCCA CCAGGGTGTC GCTATTGACA CCTTTGCCAA AGAGGTGGAA AAGCGCACCG GCGGCCGCTA CAAGGTTCAG ACTTTCTATA GCGGTGCACT GGGCGGCGAA CGCGAATCCA TCGAAGCAGT CCAACTGGGC ACCCAGGAAC TCGCCTTCTC CTCCACCGGC CCCGTCCCCA ACTTTGTACC GGAGACCAAG ATTCTCGACG TGCCCTTCCT GTTTCGCGAC AAGGCCCACG CACGCGCCGT ACTCGACGGC CCCATCGGCC AGGACCTGCT GGGCAAATTT GACGCCAAGG GTTTCAAGGC GCTGGCCTGG GGCGAAAACG GCTTTCGCCA CATGACCAAC AGCAAGCGTG ACGTGAAGGG CCCCGAGGAT CTGAAAGGTC TGAAAATGCG GACCATGGAA AACCCGGTGC ATATTGCCGC TTACAAGGGT TTTGGCATCA TTACCACGCC GATGGCATTC CCCGAAGTGT TCACCGCCCT CCAGCAGGGC ACGGTCGATG GCCAGGAAAA CCCGCTGTCG GTCATCATTG CGTCCAAGTT TGACCAGGTG CAAAAGCACC TGTCGCTGAC GGGCCACGTC TACTCGCCCT GCATCTGGGT GATGAACAAG GCAGTCTTCG ACAAGCTCAG CGCGGCCGAC AAGCAGGCGT TTCTTGACGC CGCCAAGGAA GGCACCAAGG CCAACCGCGC ACGGGTCGAT GAGGACGACG CCAAAGGGGT CGCCGACCTG CGCGCCAAGG GCATGACGGT GATTGACAAT ATTGACAAAT CGAAATTTGT CACTGCCCTG GCACCGGTCA ACGCCGAATT CGAAAAGCAG TTCGGCAAGG CCAACATCGA GAAGATCCGC AATTACAAGT AA
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Protein sequence | MKLNKLIIGM TMALGIVASA AAQTTMKISI STSQNSHQGV AIDTFAKEVE KRTGGRYKVQ TFYSGALGGE RESIEAVQLG TQELAFSSTG PVPNFVPETK ILDVPFLFRD KAHARAVLDG PIGQDLLGKF DAKGFKALAW GENGFRHMTN SKRDVKGPED LKGLKMRTME NPVHIAAYKG FGIITTPMAF PEVFTALQQG TVDGQENPLS VIIASKFDQV QKHLSLTGHV YSPCIWVMNK AVFDKLSAAD KQAFLDAAKE GTKANRARVD EDDAKGVADL RAKGMTVIDN IDKSKFVTAL APVNAEFEKQ FGKANIEKIR NYK
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