| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1824 |
|---|
| Symbol | |
|---|
| ID | 4015534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 1888488 |
|---|
| End bp | 1889159 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637941493 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_548655 |
|---|
| Protein GI | 91787703 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0820429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00384928 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGC ATCAATTCCC GAGGGCTGGC TTGGGCTTCT CACGACGAAT CCTCTTGCAC
AAGAGTGCCG TGATACTTGG GGGCGGGCTT CTGGCCGGCC CCGCTTTTGC TGCCAAGCAA
GGCTGTCGGC CCACCGAGTC CGAAGTCCTC GGTCCGTTCT ATCGGTTCGG CGCGCCATTT
CACTCCCGGC TGGCAGGTCC TGACGAGCCC GGTGACAGGC TTGTTCTGAC CGGCACGGTG
TTCAGTTCAG ATTGCCGTAC ACCCCTCCCG GGGGCATTGA TCGAGGTGTG GCAAGCGAAT
CACGCTGGCT TATACGACAC CAACAAGCCC GGCAACTTCA CCGAGGCTGG TACCTTCCAC
TTGCGGGGGA TGCTGTATAC GAATGAAAAG GGGCAATACG AGATTGAGAC GATTGTGCCG
GGCCGATACC CGATTCCGCC AAATCTCCCG GGGCTCGAGA AATATGCGGG GCTGACGCGA
CCTGCGCATA TTCACTTTCG GGTCATGGAA TCGCTGCACG TTCCGGTGAC GACGCAGCTC
TATTTCAAGG GCGACCCCTT CATTGCCAAA GATCCGTGGG CCGGCCGCAA GCCATCATTG
GCCATTGATT TAAAGCAGGA TGGCAAGCTA CGCCGCAGTG TGTTTGACGT CGTACTTGCC
AGGGGCTTAT AG
|
|---|
| Protein sequence | MDKHQFPRAG LGFSRRILLH KSAVILGGGL LAGPAFAAKQ GCRPTESEVL GPFYRFGAPF
HSRLAGPDEP GDRLVLTGTV FSSDCRTPLP GALIEVWQAN HAGLYDTNKP GNFTEAGTFH
LRGMLYTNEK GQYEIETIVP GRYPIPPNLP GLEKYAGLTR PAHIHFRVME SLHVPVTTQL
YFKGDPFIAK DPWAGRKPSL AIDLKQDGKL RRSVFDVVLA RGL
|
|---|
| |