Gene Bpro_1691 details

Gene Information

• Locus tag: Bpro_1691
• Symbol: rimM
• ID: 4015671
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polaromonas sp. JS666
• Kingdom: Bacteria
• Replicon accession: NC_007948
• Strand: +
• Start bp: 1741839
• End bp: 1742480
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637941363
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_548525
• Protein GI: 91787573
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGAGGGGCA GCGCAGCACA CGAAGTGGCA AGCGTGGGGG CTAACAGTTC TTCGCCTGCG 
GGCTTGACAC CGTCAAGCCT TCCGGACGAC GCCATTGAGG TTGGGCGCAT CCTGGATGCC 
TGGGGTGTCA AGGGCTGGGT GAAAATCCTG CCGCACAGCA CCGATCCGGA GGCCCTTTTC 
TCGGCCAAAT CCTGGTTTCT CCAGGCTCCG GAAGCCAAAT TCCGCCCGGG TTTCAACGCG 
TTCTCCGGAA CCGTTTTGCT CAGCGTGGAC GAGGCCAAAA CCCACTCCGA CACTGTCGTC 
GCCAAATTCA GCGGCCAGGA CGATCGCAAT GCCGCAGAGG CCTTGCGGGG CGCCCGCATT 
TTTCTGCCGC GCAGCAGTTT CCCGGTTGCC TCCAAGGACG AGTATTACTG GGTCGACCTG 
ATAGGCCTGA ATGTCGTCAA CCGCGAGGGC GTGCCCCTGG GGCAGGTGCG CGACCTGATG 
ACGACCGGTC CCCATTCGGT GCTGTGCGTG GAGTACACGG CGCAGCAGGA AGACGGCACG 
GCTGTAACCG CCGAACGCAT GATTCCCTTT GTCTCCGCCT ATATCGACAC GGTCGATATC 
GCGGGCAAAT GCATCACGGT CGACTGGCAG CCCGACTATT GA 

 

Protein sequence

MRGSAAHEVA SVGANSSSPA GLTPSSLPDD AIEVGRILDA WGVKGWVKIL PHSTDPEALF 
SAKSWFLQAP EAKFRPGFNA FSGTVLLSVD EAKTHSDTVV AKFSGQDDRN AAEALRGARI 
FLPRSSFPVA SKDEYYWVDL IGLNVVNREG VPLGQVRDLM TTGPHSVLCV EYTAQQEDGT 
AVTAERMIPF VSAYIDTVDI AGKCITVDWQ PDY