| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1461 |
|---|
| Symbol | |
|---|
| ID | 4012342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 1511517 |
|---|
| End bp | 1512356 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637941140 |
|---|
| Product | transketolase subunit A |
|---|
| Protein accession | YP_548307 |
|---|
| Protein GI | 91787355 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3959] Transketolase, N-terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.297998 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGG TGGCCTCACT GACGGATTGC GCCTACCGCA TTCGCCGCTA CGCGCTGCGC
ATGGGCGAGG TGCAAGGGCA GGGCTATATT GGCCAGGCGC TGGGGCTGGC CGATGCGCTG
GCGGTGGCGT ACGGACACGC GCTGAACTAT CGGCCGGAAG ACCCGCAGTG GGAAGGGCGG
GATCGGTTTT TGTTGTCGCA TGGCCATTAC GCGATCGCCC ACTACGCGGC CCTCATTGAA
GCGGGTGTGC TGCCCGAGGA AGAGCTCGAA ACCTATGGCA GCGACGACAG CCGCCTGCCG
ATGTCGGGCA TGGCCGCTTA CACACCGGGG ATGGAGATGT CAGGGGGCTC GCTGGGCCAG
GGCCTGGTCA TTGCCGTTGG CATGGCGCTG GGCCTGCGCC TGAAGCGCAA CCCGGCCTTT
GTCTACAACT CCATGTCGGA TGGTGAACTC GACGAGGGCT CGACCTGGGA GGCCGCCATG
TCAGCCGCGC ACCATGGCCT GTCAAATCTC ATCTGCATGG TGGACATCAA CAACCAGCAG
GCCGACGGGT CGTCCGGCCA GGTGCTGCGT TTTGAGCCGA TTGCCGACAA ATGGGCGGCC
TTTGGCTGGC ATGTGCAGCG CGTGAACGGC AACGACCTGG GCGCCGTGCT GGCCGCCTTT
GACGCCGCCC GCCGGTATGA CCTGCCCCAG CCGCGCGTGA TCCTGCTCGA CACCCTGATG
GGCAAGGGCG TGCCCTTTCT GGAGCAGCGC GAAAAAAATC ATTTCATCCG GGTCGACCCG
CCTGAATGGC AGCAGGCCAT CGCGATTCTT GACGCCCAAC ATGCCGGAGC CAGCGAATGA
|
|---|
| Protein sequence | MSTVASLTDC AYRIRRYALR MGEVQGQGYI GQALGLADAL AVAYGHALNY RPEDPQWEGR
DRFLLSHGHY AIAHYAALIE AGVLPEEELE TYGSDDSRLP MSGMAAYTPG MEMSGGSLGQ
GLVIAVGMAL GLRLKRNPAF VYNSMSDGEL DEGSTWEAAM SAAHHGLSNL ICMVDINNQQ
ADGSSGQVLR FEPIADKWAA FGWHVQRVNG NDLGAVLAAF DAARRYDLPQ PRVILLDTLM
GKGVPFLEQR EKNHFIRVDP PEWQQAIAIL DAQHAGASE
|
|---|
| |