| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1432 |
|---|
| Symbol | |
|---|
| ID | 4011017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 1479941 |
|---|
| End bp | 1481029 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637941112 |
|---|
| Product | tartrate dehydrogenase |
|---|
| Protein accession | YP_548279 |
|---|
| Protein GI | 91787327 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.360239 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGT ACAAGATCGC GTGCATCCCC GGTGACGGCA TCGGCAAGGA AGTGGTACCG
GCCGGCCAGA CCGTGCTCGA AGCACTGGCC GCCACGCAGA ACAAATTCAA ATTCGAGTTC
ACCTCGTTTG ACTGGGGCGG CGACTATTTC CGCCAGCACG GCGTGATGAT GCCGGAGGAC
GGCCTGGATG CGCTGCGCGA CAAGGACGCA ATCCTGTTCG GCTCCGCCGG CGACCCGCAC
ATCCCGGACC ACATCACGCT GTGGGGCCTG CGCCTGAAGA TCTGCCAGGG CTTTGACCAG
TACGCCAACG TGCGCCCCAC GCGCATCCTG CCCGGCATCG ACGGCCCCCT GAAGCGCTGC
AAGCCTGAAG ACCTGAACTG GGTCATCGTG CGCGAAAACT CCGAGGGCGA GTATTCGGGC
GTCGGTGGCC GCGCCCACCA GGGCCATCCG ATCGAGGTGG CCACTGATGT CTCGATGATG
ACCCGTGCCG GTGTGGAGCG CATCATGCGT TTTGCCTTCA AGCTGGCGCA ATTACGCCCC
CGCAAGCTGC TGACCGTGAT CACCAAGTCC AATGCCCAGC GCCACGCCAT GGTGATGTGG
GACGAGATCG CCCTGCAGAT CTCCAAAGAG TTCCCGGACG TCAAATGGGA CAAGGAACTG
GTGGATGCCT CGACGGCGCG CATGATCAAC CGCCCGGCCT CGCTCGACAC CATTGTGGCA
ACCAACCTGC ACGCCGACAT CCTGAGCGAC CTGGCCGCCG CGCTGGCCGG CAGCCTGGGC
ATTGCGCCCA CCGGCAACAT TGACCCCGAA CGCCGCTATC CGTCGATGTT CGAGCCCATC
CATGGCTCGG CCTTCGACAT CATGGGCAAG GGCCTGGCCA ACCCGGTCGG CACCTTCTGG
TCCTGCGTGA TGATGCTTGA ACACCTCGGT GAGCCTGAGG CCGCCAGGGT GTTGATGGAT
GCCGTGGAGG CCATCACCGC CGACCCGGCG CTGCATACCG GCGACCTGGG CGGCAAGGCC
ACGATGGCAC AGGTCACCGA AGCCGTCTGC GCGCTTTTTG CCGCGGCCCC GGTGCGCCAG
GCGGCGTGA
|
|---|
| Protein sequence | MKTYKIACIP GDGIGKEVVP AGQTVLEALA ATQNKFKFEF TSFDWGGDYF RQHGVMMPED
GLDALRDKDA ILFGSAGDPH IPDHITLWGL RLKICQGFDQ YANVRPTRIL PGIDGPLKRC
KPEDLNWVIV RENSEGEYSG VGGRAHQGHP IEVATDVSMM TRAGVERIMR FAFKLAQLRP
RKLLTVITKS NAQRHAMVMW DEIALQISKE FPDVKWDKEL VDASTARMIN RPASLDTIVA
TNLHADILSD LAAALAGSLG IAPTGNIDPE RRYPSMFEPI HGSAFDIMGK GLANPVGTFW
SCVMMLEHLG EPEAARVLMD AVEAITADPA LHTGDLGGKA TMAQVTEAVC ALFAAAPVRQ
AA
|
|---|
| |