| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1395 |
|---|
| Symbol | |
|---|
| ID | 4011909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 1433105 |
|---|
| End bp | 1434238 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637941075 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_548242 |
|---|
| Protein GI | 91787290 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.840598 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.615591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGA GAATGCCAAT CCCCATGCCC ACCATCGTGC ACCTTCCGGC CAAAGGCCCT
TTGCTTACCC GCGCCGGCTG GAGCGCTTTC ATGATTGCGC TCATCGCCGT CTGCGCGGTG
GCGCCGGTGC TGAACCTGTG GGTGCCGCAG GGCAGCATGT TCCACATGAG CACCTATGCC
GTGGCGCTGC TGGGCAAGAT CATGTGCTAC GCCATCTGCG CGCTGGCCAT GGACCTGATC
TGGGGCTACA CCGGCATTTT GTCGCTGGGC CACGGTGTGT TCTTTGCGCT GGGCGGCTAC
GCCATGGGCA TGTACCTCAT GCGCCAGATT GGGCGAGACG GCAACTACAA AAGCGACTTG
CCCGACTTCA TGGTCTTTCT CGACTGGAAG GTGCTGCCCT GGCACTGGAC CTTCAGCGAC
AGCTTTGTCG CCACGCTGAT TCTGATTGTG GCGGTGCCGG GCCTGGTGGC CTTTGTGTTC
GGCTACTTTG CCTTCCGTTC GCGCATCAAG GGCGTTTACT TTTCCATCAT CACGCAGGCC
ATGACCTTTG CCGCCATGCT GCTGTTCTTT CGCAATGAAA CCGGCTTTGG CGGCAACAAC
GGTTTTACCG ACTTCAAGCG GATTCTGAAC ATCCCGCTCG CCACGCCCTC CATGCGCATG
GTGCTGTTCG TGCTGACGGG CCTGACCCTG CTGGGCTTCT TCCTGTTTGC CAAATGGCTG
GTGGGCAGCA AGTTTGGCCG CGTGCTGCAG GCCATACGCG ATGCCGAGAC GCGCGTGATG
TTCTCGGGCT ACAACCCGCT GGGCTACAAG CTCACCATCT GGGTGATTTC GGCCGTCATG
TGCGGCGTGG CGGGCGCGCT GTATGTGCCG CAGGTCGGCA TCATCAACCC CGGTGAAATG
AGCCCGGCCA ACTCGATCGA GATTGCCATC TGGGCGGCGG TGGGGGGGCG CGCCAGCCTG
ATCGGGCCGA TTGTGGGCGC CTTCATCGTC AACGGCGCCA AGAGCTGGCT CACTGTGGCG
TATCCGGAGT TCTGGCTGTA TTTTCTGGGC GCCTTGTTTA TTGGCGTGAC GCTGTTCCTG
CCCAATGGTG TCGTCGGGCT CGTGAAGAAG CTCCGTAAGG GAGGTGAGAA ATGA
|
|---|
| Protein sequence | MNMRMPIPMP TIVHLPAKGP LLTRAGWSAF MIALIAVCAV APVLNLWVPQ GSMFHMSTYA
VALLGKIMCY AICALAMDLI WGYTGILSLG HGVFFALGGY AMGMYLMRQI GRDGNYKSDL
PDFMVFLDWK VLPWHWTFSD SFVATLILIV AVPGLVAFVF GYFAFRSRIK GVYFSIITQA
MTFAAMLLFF RNETGFGGNN GFTDFKRILN IPLATPSMRM VLFVLTGLTL LGFFLFAKWL
VGSKFGRVLQ AIRDAETRVM FSGYNPLGYK LTIWVISAVM CGVAGALYVP QVGIINPGEM
SPANSIEIAI WAAVGGRASL IGPIVGAFIV NGAKSWLTVA YPEFWLYFLG ALFIGVTLFL
PNGVVGLVKK LRKGGEK
|
|---|
| |