Gene Bpro_1333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_1333 
Symbol 
ID4011980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp1373229 
End bp1375475 
Gene Length2247 bp 
Protein Length748 aa 
Translation table11 
GC content63% 
IMG OID637941013 
Product(p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA 
Protein accessionYP_548181 
Protein GI91787229 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.49829 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCCA TGGTTTTGCC CGCCGTTTCC AGCAAGTCGA CCCCGGCCGC CGCCAATGCT 
GCCGCGGCCA GTTTCGCTGC ACTCACGGCC GGGCTCGACT ACCTGAGCAC TGCGGATATC
GACAGTGTCC GGCGAGCCTA CCGTTTCGCC GACGAAGCTC ACCTGGGCCA GTTGCGCAAC
AGCGGTGAAC CCTACATCAC CCATCCGATT GCCGTCGCGC AACAGTGCGC GGAGTGGAAG
CTTGACGCCC AGGCGCTGAT GGCGGCACTG CTGCACGATG CCATTGAAGA CTGCGGCGTG
ACCAAGCCCG AACTGATCGA GCGCTTTGGG GCGCCGGTGG CCGAGCTGGT GGATGGCCTG
ACCAAGCTGG AAAAGCTGGA GTTCAATACC CGCGAGGAAA ACCAGGCCGA GTCGTTCCGC
AAGATGCTGC TGGCGATGGC GCGCGATGTA CGCGTCATTC TGATCAAGCT GGCCGACCGC
ACCCACAACA TGCGCACGCT GGGCGATGTC CCGCGCGCCA AGTGGAGCCG CATCTCGCGC
GAAACCCTGG ACATCTACGC ACCGATTGCC CACCGCCTGG GCCTGAACGC GACTTACCGG
GAACTGCAAG ACCTCTCCTT CCAGCACCTG CACCCCTGGC GCTACGCGAC ACTGACCAAG
GCCCTGCTGC GCGCCCGCGG CCGCCGGCGC GACGTGATCA AACGGGTGCA GTCCGAAGTC
GAATCGGCGT TTGCCAATGC CGGCATCCCG GTGCACATCT ATGGGCGTGA GAAGACGCTG
TATTCCATCT ACCGCAAGAT GGACGAAAAA CACCTGTCTT TCGCCCAGGT CACCGACCTT
TACGGCTTTC GGATCATCGT GCAGGACCTC ACCGCCTGCT ACACGGCCAT GGGCGTTTTG
CATCAGCTGT ACAAGCCGCT GCCCGGAAAA TTCAAGGACT ATATTGCGAT TCCGAAGATC
AATGGCTACC AGTCGCTGCA CACCACACTG GTCGGTCCGT TCGGCACCAA TATCGAGTTC
CAGATGCGTA CCGACGCCAT GCATGTGGTG GCGGAGTCGG GGGTAGCCGC GCACTGGCTC
TACAAGGCCA CAGACCCCGA GAGTGATGCC TCCCAGCGCC TGGGCGCCCA ATGGCTGCAG
TCCCTGCTGG ATATCCAGCA GGAAACACGC GACGCCGCCG AGTTCTGGGA CCATGTCAAG
ATCGACCTGT TTCCGGAAGC CGTCTATGTG TTCACCCCCA AGAGCCAGAT CATGGCCATG
CCGCGGGGTG CGACCATTGT GGACTTCGCC TACGCCATCC ACAGCGATGT CGGGCACCGC
GCCGTAGCGG CCAAGGTCAA CGGCGAGCAG GTCCCCCTGC GCTCCGAGCT GCACAACGGC
GACGTGGTCG AAATCATCAC GGCCTCGGTC TCCAGTCCCA ACCCAGGCTG GCTCGGCTTT
GTGCGCACCG GCAAGGCTCG CTCCAAAATC CGTCATCACC TCAAGACCAT GGCACTGGCG
GAATCGCAGG AGCTGGGTGA AAAAATGCTG ACGCAGGCCT TGCGTGCGGA AGGCATCGAA
AGGGAGCGCA TCCCCGAGGA CGACGAAGCC CATCAGGCAA CCTGGGAAAA AATCCTGCGC
TTTACCGGCA ACCGCTCACG TGCCGATTTG CTCACCGACA TCGGGCTGGG CAAGCGTATC
GCAACCATGG TGGCCAAGCG CATTGTGACC TTGCTGGCAG AAACCGGCGA AAAACCCGAC
GCCCTGCTGA TGAGCCGTGA ACGCTATACC GCCCATGAGT CGGTATCACA GGGTGCGCTG
CTGCTTGATG GCAGTGAGGG CGCCTCGGTG CAGTTTGCGC CCTGTTGTCG GCCCATCCCG
GGCGATGGCA TTGTCGGCTA CCTGGGCCGG GGTGAGGGGC TGGTCGTGCA TACGGACGAC
TGCGCCGTGG CCAAGCGCCT GCAGCACCGC GACAGCGAGC GCTTCATTGC CGTGGACTGG
TCCGACGAAC CGGTGCGCAC ATTTGAGACC AATCTTCTGG TGACGGTGGC CAACGGCAAA
GGAGTTCTGG CCCGGGTGGC CGCCGCGCTG GCCAGCGCCG AAGCCGACAT CACGCATGTT
GATATGGGGC AGGAAGCCGC GCAGGATGCA ACCGACCTGC GCTTTGGGGT GGCGGTGCGG
GACCGTGTTC ACCTGGCATC GGCGCTGCGC AGCGTCAAGC GCACCCCCTC CGTGCTGCGG
GTGCAGCGCG CCAAGGCGGC GGGGTGA
 
Protein sequence
MKAMVLPAVS SKSTPAAANA AAASFAALTA GLDYLSTADI DSVRRAYRFA DEAHLGQLRN 
SGEPYITHPI AVAQQCAEWK LDAQALMAAL LHDAIEDCGV TKPELIERFG APVAELVDGL
TKLEKLEFNT REENQAESFR KMLLAMARDV RVILIKLADR THNMRTLGDV PRAKWSRISR
ETLDIYAPIA HRLGLNATYR ELQDLSFQHL HPWRYATLTK ALLRARGRRR DVIKRVQSEV
ESAFANAGIP VHIYGREKTL YSIYRKMDEK HLSFAQVTDL YGFRIIVQDL TACYTAMGVL
HQLYKPLPGK FKDYIAIPKI NGYQSLHTTL VGPFGTNIEF QMRTDAMHVV AESGVAAHWL
YKATDPESDA SQRLGAQWLQ SLLDIQQETR DAAEFWDHVK IDLFPEAVYV FTPKSQIMAM
PRGATIVDFA YAIHSDVGHR AVAAKVNGEQ VPLRSELHNG DVVEIITASV SSPNPGWLGF
VRTGKARSKI RHHLKTMALA ESQELGEKML TQALRAEGIE RERIPEDDEA HQATWEKILR
FTGNRSRADL LTDIGLGKRI ATMVAKRIVT LLAETGEKPD ALLMSRERYT AHESVSQGAL
LLDGSEGASV QFAPCCRPIP GDGIVGYLGR GEGLVVHTDD CAVAKRLQHR DSERFIAVDW
SDEPVRTFET NLLVTVANGK GVLARVAAAL ASAEADITHV DMGQEAAQDA TDLRFGVAVR
DRVHLASALR SVKRTPSVLR VQRAKAAG