| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1296 |
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| Symbol | |
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| ID | 4012190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 1337854 |
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| End bp | 1339638 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637940974 |
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| Product | tetratricopeptide TPR_4 |
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| Protein accession | YP_548144 |
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| Protein GI | 91787192 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.251517 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAA GACTTAGCCG TGCCCTCGGC TGCCTCTGCC TCGCCGCCCC CATGGTGCTG
GCGCAGACCC AAGCGCCCGC CCCCGCCGCA CCCGCTGCAC CTTCCGGGCT CGCCGAAGCC
AAAGCCGCGC AGGACGCAGC GCCGCCCGCC TCGCCGCTCG ATAGCGCACT GTTTTACCAG
CTGCTTGTGG GTGAAATCAC CACGCAGGAT GGAGAGCCCG CCGCGGGTTT CGCGCTGATG
CTGGACGCAG CCCGCAAAAC GGGCGAGGCC CAGCTTTACC AGCGAGCCAC CGATATTGCC
CTGCAGTCGC GCTCCGGCGA CGCCGCGCTG CAGGCGGCAC AGGCCTGGAA GCAGGCCCAG
CCTGCCTCGC GCGAGGCCAA CCGCTATGTG CTGCAAATCC TGATCGCACT GAACCGCATT
CCCGAAACGG CAGACCTGCT GAAAACCGAG ATCGCCCTGG CACCGGAGGC CGAGCGCAAT
GCGGTCCTGG CCGCAGTGCC GCGCGCCTAC GCCCGTGTCA GTGACAAAAA ATTGTCCAGC
ACCGTTGTGC AGGAGGGCCT GGACACCTAC CTGAACAATC CCGCCACCGC CGGCGCCGCC
TGGGCCACCG TAGGACGCAT GCGGCTGGCC GCAGACGACA GCAATGGCGC ACTCGACGCG
GCCAAACGCG GCCAGGCCGC CGACGCTCAC GCGGAAGGCC CGGCCATGCT GGCGCTGGAG
CTGATGGACC CCAAACTGCC CGAAGCAGAA GGCCTGGTCA GGAAATACCT TGAAGGCAAC
GCCAAGGCCC AGCCCGAATT CCGCATGGCT TACGCACGGG CCCTGCTGGA TGCACAGCGC
TATGCAGAAG CGGCCACGCA GTTGCAGGCG GTGACCCGTG AAAAACCCGA CTACCCGGAA
AGCTGGCTGG TGCTGGGCTC TTTGCAACTG CAGGACAACC AGCTCGCGCA GGCGCAGGCC
TCGCTGCAAC GCTATGTCAC GCTGGCGGAG CAGCAGGCTG CGGATACCGA CCGTAACCGC
GGACTGGCCC AAGCCTACCT CTCGCTGTCG CAAGTGGCTG AAAAGCGCAA GGACTATGCA
GCAGCGGAAA ACTGGCTGAA CAAAATCGAG GATGCGTCCG AACTGACGGC GGCGCAAACC
CGCCGCGCCT CCATCCTGGC GAGCCAGGGC AAGCTCGAAG AAGGCCGGAA GCTCATCCGC
CAGCTGCCCG AACGCAGCCC TGGTGATGCG CGGCTGAAGC TCAACGCCGA AGTCGGACTG
CTTCGCGATC TGAAGCAATA CCGGCTTGCC CATGATGTGC TGGCCGAGGC CCTGAGCAAG
ACGCCCGATG AACCGGAACT GCTGTACGAC CAGGCCATGA TGGCCGAAAA ACTCGCATCG
CTCGGCGAGA TGGAGCGCCT GCTGCGCCAG GTCATCCAGC TCAAGCCCGA CTATCACCAC
GCGTACAACG CGCTCGGTTA TTCGCTGGCA GACCGCGGTG TTCGCCTGCC GGAAGCCCGT
GACCTGATCC AGAAAGCGCT CGGCTTCGCG CCGACCGACC CCTTTATCAA GGACAGCCTG
GGCTGGGTTG AATACCGCAT GGGCAACAAG ACGGAAGCAC TCCGCATTTT TGAGGCCGCC
TACAAGGCCA AACCCGACGC GGAAATTGCC GCGCACTACG GGGAGGTCTT GTGGAGTCTG
GGCCAGCGCG AACGGGCGAC GGCGATCTGG AAGGAAGGCT TGCTGTTGAA CCCCGACAAC
GAGACCTTGC AGGAAACCCT CAAGCGCCTG CGTGTCAAGC TGTAA
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| Protein sequence | MKKRLSRALG CLCLAAPMVL AQTQAPAPAA PAAPSGLAEA KAAQDAAPPA SPLDSALFYQ
LLVGEITTQD GEPAAGFALM LDAARKTGEA QLYQRATDIA LQSRSGDAAL QAAQAWKQAQ
PASREANRYV LQILIALNRI PETADLLKTE IALAPEAERN AVLAAVPRAY ARVSDKKLSS
TVVQEGLDTY LNNPATAGAA WATVGRMRLA ADDSNGALDA AKRGQAADAH AEGPAMLALE
LMDPKLPEAE GLVRKYLEGN AKAQPEFRMA YARALLDAQR YAEAATQLQA VTREKPDYPE
SWLVLGSLQL QDNQLAQAQA SLQRYVTLAE QQAADTDRNR GLAQAYLSLS QVAEKRKDYA
AAENWLNKIE DASELTAAQT RRASILASQG KLEEGRKLIR QLPERSPGDA RLKLNAEVGL
LRDLKQYRLA HDVLAEALSK TPDEPELLYD QAMMAEKLAS LGEMERLLRQ VIQLKPDYHH
AYNALGYSLA DRGVRLPEAR DLIQKALGFA PTDPFIKDSL GWVEYRMGNK TEALRIFEAA
YKAKPDAEIA AHYGEVLWSL GQRERATAIW KEGLLLNPDN ETLQETLKRL RVKL
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