| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1288 |
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| Symbol | |
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| ID | 4012181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 1329756 |
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| End bp | 1331036 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637940965 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_548136 |
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| Protein GI | 91787184 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.689308 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATCG CGCTGCTGCT GATTTTTCTC GTCCTGTCGG CGCTTGGCGT CCCGCTGGCC
ATTGCGTTGG GCCTGTCCGG CGTGGCCAGC GTCTTCATGT TCACCTCGAC GCCGCTGAAC
CTGTTGTCCG AGAGCATGTT TTCAGCGATG AATTCCTTCC TGCTGGTTGC GGTTCCGCTG
TTCCTGCTGG TCGGTCAGTT GATGGAACGC GGCGGGGTCG CCGACCGGAT TTTCGACTTT
GCCCATGCGG CCGTCGGCTG GCTGCCTGGC GGCATGGGCC ATGTCAACGT AACCTCCTCG
GTGGTCTTCG GCGGCATCTC GGGCTCCTCG GTCGCCGACA TCGCCTCGCT GGGCGCAGTC
GAGATCAATG CCATGACGCG GCATGGCTAC GACAAGGGCT ATGCGGTCGG CATGACACTG
ACCACCTCGA CCCTGTCCTC GATCATTCCG CCCTCGATCC TGATGGTGAT TGCAGGCTCG
ATCGCCAGCC AGTCGATCGG CCTGCTACTG GTCGCCGGCC TGATCCCCGG CCTGTTTATC
GCCGCCATGC TGATGGTCTA CAACCACTTC TACAGCGTGC GCAAAGGCGT CGGCAAGCCC
ATGCCCTTCA GCGGGGGGCT GCTGCTGCGT GCCGGTCTGC GCGCGATCCT GCCGATGATG
ACACCGGTGA TCCTGATGAT CGGCATTCTG GACGGCTTCT TCACCCCGAC CGAAGCCGCC
GCGATTGCCG TGGTCTACAC GCTTTCGATT GCAGCAGTGA TCTACCGCCG GATCAAGTGG
AAGGACATCG CCCCGATGCT GATCGATACC GCACGGACCA GCGGCAACAT CCTGTTCATC
GCAGCCACGG CCAAGCTGGC GGCCTGGGTC TTCGCTTATG ACGGCCTGCC GGTGCAGGTC
GGCAATGCCT TGGGTTCGAT CACCACCAAC CCCATGCTGA TCATGCTGCT GATCTTCCTG
TTCCTGGTGG TAGTCGGCAT GTTCATGGAT GCCATCGCGG CCATGTTCAT CCTGATTCCG
GTGCTGCTGC CGCCGGCCGT AGCCCTGGGC ATCGACCCGA TTCACCTGCT GGTGATTGTG
GTCGTCACAT TGACCCTGGG TCTGGTGACG CCCCCGGTGG GCGTCTGTCT GTTCGCCGCG
GCGAAGGTGG CAGACATGTC CGTGGAGGAG GTCATCAAGG GCTCAATCGG CCCCGTCTCG
GTTCTGATCC TCTCCATCCT CGCCATGGTT CTTTTCCCCG TGCTGGTCAT CGGTCCACTG
CGCCTGTTTG GCATGTACTG A
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| Protein sequence | MSIALLLIFL VLSALGVPLA IALGLSGVAS VFMFTSTPLN LLSESMFSAM NSFLLVAVPL
FLLVGQLMER GGVADRIFDF AHAAVGWLPG GMGHVNVTSS VVFGGISGSS VADIASLGAV
EINAMTRHGY DKGYAVGMTL TTSTLSSIIP PSILMVIAGS IASQSIGLLL VAGLIPGLFI
AAMLMVYNHF YSVRKGVGKP MPFSGGLLLR AGLRAILPMM TPVILMIGIL DGFFTPTEAA
AIAVVYTLSI AAVIYRRIKW KDIAPMLIDT ARTSGNILFI AATAKLAAWV FAYDGLPVQV
GNALGSITTN PMLIMLLIFL FLVVVGMFMD AIAAMFILIP VLLPPAVALG IDPIHLLVIV
VVTLTLGLVT PPVGVCLFAA AKVADMSVEE VIKGSIGPVS VLILSILAMV LFPVLVIGPL
RLFGMY
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